Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   RJW54_RS06665 Genome accession   NZ_CP134487
Coordinates   1343911..1344507 (-) Length   198 a.a.
NCBI ID   WP_002935848.1    Uniprot ID   A0ABV2ES67
Organism   Streptococcus suis strain MY1C3_3B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1338911..1349507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS06645 (RJW54_06625) - 1340013..1340711 (-) 699 WP_012775213.1 TIGR02206 family membrane protein -
  RJW54_RS06650 (RJW54_06630) murF 1340802..1342163 (-) 1362 WP_024394415.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  RJW54_RS06655 (RJW54_06635) - 1342292..1342672 (-) 381 WP_024382539.1 OsmC family protein -
  RJW54_RS06660 (RJW54_06640) - 1342760..1343806 (-) 1047 WP_024394416.1 D-alanine--D-alanine ligase -
  RJW54_RS06665 (RJW54_06645) recR 1343911..1344507 (-) 597 WP_002935848.1 recombination mediator RecR Machinery gene
  RJW54_RS06670 (RJW54_06650) pbp2b 1344516..1346591 (-) 2076 WP_024394417.1 penicillin-binding protein PBP2B -
  RJW54_RS06675 (RJW54_06655) - 1346683..1347132 (-) 450 WP_043032937.1 ATP-binding cassette domain-containing protein -
  RJW54_RS06680 (RJW54_06660) vicX 1347693..1348496 (-) 804 WP_172015546.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21693.80 Da        Isoelectric Point: 4.4757

>NTDB_id=804012 RJW54_RS06665 WP_002935848.1 1343911..1344507(-) (recR) [Streptococcus suis strain MY1C3_3B]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=804012 RJW54_RS06665 WP_002935848.1 1343911..1344507(-) (recR) [Streptococcus suis strain MY1C3_3B]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGATATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAATCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49