Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   RJW49_RS09780 Genome accession   NZ_CP134477
Coordinates   1939018..1939605 (-) Length   195 a.a.
NCBI ID   WP_014736524.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1934018..1944605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS09755 (RJW49_09755) tnpA 1934657..1935170 (-) 514 Protein_1885 IS200/IS605 family transposase -
  RJW49_RS09760 (RJW49_09760) - 1935330..1936271 (-) 942 WP_074393593.1 LacI family DNA-binding transcriptional regulator -
  RJW49_RS09765 (RJW49_09765) - 1936635..1937381 (-) 747 WP_014736521.1 amino acid ABC transporter ATP-binding protein -
  RJW49_RS09770 (RJW49_09770) - 1937391..1938050 (-) 660 WP_014736522.1 amino acid ABC transporter permease -
  RJW49_RS09775 (RJW49_09775) - 1938063..1938866 (-) 804 WP_014736523.1 amino acid ABC transporter substrate-binding protein -
  RJW49_RS09780 (RJW49_09780) lytF 1939018..1939605 (-) 588 WP_014736524.1 CHAP domain-containing protein Regulator
  RJW49_RS09785 (RJW49_09785) - 1939931..1941307 (-) 1377 WP_074393592.1 PTS sugar transporter subunit IIC -
  RJW49_RS09790 (RJW49_09790) - 1941367..1941792 (-) 426 WP_014736526.1 DUF3284 domain-containing protein -
  RJW49_RS09795 (RJW49_09795) - 1941811..1942125 (-) 315 WP_074393591.1 PTS lactose/cellobiose transporter subunit IIA -
  RJW49_RS09800 (RJW49_09800) - 1942127..1942438 (-) 312 WP_012027953.1 PTS sugar transporter subunit IIB -
  RJW49_RS09805 (RJW49_09805) - 1942451..1944445 (-) 1995 WP_014736528.1 transcription antiterminator -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 20436.00 Da        Isoelectric Point: 4.8667

>NTDB_id=803945 RJW49_RS09780 WP_014736524.1 1939018..1939605(-) (lytF) [Streptococcus suis strain NLS40]
MNYQMIKKQFKLGLFTALIGNLLWSGMVNVSADDTVISDSPTVSALTKKVEAAAEKIVAEKAAAAAKAALATNMVSEVAV
EYTANTYPAGQCTWGAKEMAPWVGNYWGNGGDWAASAAALGYEVGTTPKVGAIAVWTDGGYGHVAYVTDVAANGHIQVKE
SNYGGVYYPSNVRGFFDPTTTSEGTVSYIYPPAGV

Nucleotide


Download         Length: 588 bp        

>NTDB_id=803945 RJW49_RS09780 WP_014736524.1 1939018..1939605(-) (lytF) [Streptococcus suis strain NLS40]
ATGAATTATCAAATGATAAAAAAACAATTCAAATTGGGACTGTTTACAGCCCTCATAGGAAATCTTTTATGGTCGGGAAT
GGTGAATGTCAGTGCAGATGACACAGTTATAAGCGATAGTCCGACAGTATCAGCGTTAACAAAAAAGGTTGAAGCTGCTG
CAGAAAAAATTGTGGCTGAGAAAGCTGCTGCCGCTGCAAAGGCTGCTTTGGCTACCAATATGGTGTCAGAGGTTGCTGTG
GAATATACGGCTAATACCTATCCAGCTGGTCAGTGTACTTGGGGTGCCAAAGAAATGGCTCCTTGGGTTGGAAACTATTG
GGGTAATGGTGGAGATTGGGCAGCTAGTGCGGCAGCGCTTGGATATGAAGTGGGAACTACTCCAAAAGTTGGCGCTATTG
CTGTATGGACAGATGGAGGCTACGGTCATGTTGCCTATGTAACAGATGTGGCAGCTAACGGTCACATTCAAGTTAAGGAA
TCAAACTATGGTGGAGTATACTACCCAAGTAATGTTCGAGGTTTCTTTGATCCAACAACGACTAGCGAAGGAACAGTCAG
CTATATTTACCCACCAGCTGGAGTATAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(84-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

66.667

55.385

0.369
  lytF Streptococcus gordonii str. Challis substr. CH1

66.667

55.385

0.369