Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   RJW49_RS01175 Genome accession   NZ_CP134477
Coordinates   216090..218423 (+) Length   777 a.a.
NCBI ID   WP_014735359.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 211090..223423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS01155 (RJW49_01155) treP 211758..213737 (-) 1980 WP_142390211.1 PTS system trehalose-specific EIIBC component -
  RJW49_RS01160 (RJW49_01160) treR 213971..214684 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  RJW49_RS01165 (RJW49_01165) - 214742..215053 (+) 312 WP_014735358.1 hypothetical protein -
  RJW49_RS01170 (RJW49_01170) - 215050..215598 (+) 549 WP_002935945.1 CvpA family protein -
  RJW49_RS01175 (RJW49_01175) mutS/mutS2 216090..218423 (+) 2334 WP_014735359.1 endonuclease MutS2 Machinery gene
  RJW49_RS01180 (RJW49_01180) - 218447..219158 (+) 712 Protein_199 GNAT family N-acetyltransferase -
  RJW49_RS01185 (RJW49_01185) trxA 219370..219684 (+) 315 WP_014735360.1 thioredoxin -
  RJW49_RS10350 - 219778..219828 (-) 51 WP_353735889.1 hypothetical protein -
  RJW49_RS01190 (RJW49_01190) - 219818..221347 (+) 1530 WP_014735361.1 AMP-binding protein -
  RJW49_RS01195 (RJW49_01195) msrB 221387..222325 (+) 939 WP_074393367.1 peptide-methionine (R)-S-oxide reductase MsrB -
  RJW49_RS01200 (RJW49_01200) - 222456..223088 (+) 633 WP_243665366.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 87522.18 Da        Isoelectric Point: 6.6500

>NTDB_id=803882 RJW49_RS01175 WP_014735359.1 216090..218423(+) (mutS/mutS2) [Streptococcus suis strain NLS40]
MNNKIIETLEFHKVRQKIEPYLLTEQGFEELRQLEPMVEVHRIQQAFDELTDIAQIFVENPYFSLAATSDIGPAMRRLEL
DTDLNIAELLAVKKVLEVSKSLLDFYGNLENVSLSQLDKLFEKIELFPHLQGSLQSINDAGFVEDFASEKLARIRRKIRE
AEDQVRQVMQDILKTKGDMLSDSILASRNGRNVLPVKNTYRNKIAGVVHDISASGSTVYIEPRAVVTLNEEISHLRAEER
HELNRILQELSDMLRPHSGVIRNNAWLIGHIDFVRAKHLFARDHQAVVPKLSEKQDIALLNVRHPLIAKPVPNDLYFGSQ
LTAIVITGPNTGGKTITLKTLGLTHLMAQSGLPILADKGSRVAIFKEIFADIGDEQSIEQSLSTFSSHMTHTVQILAEAD
QDSLILFDELGAGTDPQEGASLAMAILDDLRLRGIKTMATTHYPELKAYGIETSGIENASMEFDTNSLRPTYKFMQGVPG
RSNAFEIARRLGLSDIIIQSAQSWTDTDSDVNRIIEKLESQTVESRQRLDKIRDVEQENYKMNRALRKLYDELNRERENE
LNKARLEAKEIVDMALAESEDILKNLHAAASLKPHQIIEAKAELKKLAPEVVDLSKNKVLKKAKIQREAKVGDDIIVTAY
GQRGTLTNQLKDGRWEAQVGLIKMTLAKDEFELVKAEKAEQPKKRQVHTVKRANVRGPKARLDLRGKRYEEAMMELDEFI
DQALLNNLAQVDIVHGIGTGVIREGVTKYLRRNKQVKEFGYAPQNAGGSGCTIVTFK

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=803882 RJW49_RS01175 WP_014735359.1 216090..218423(+) (mutS/mutS2) [Streptococcus suis strain NLS40]
ATGAATAATAAAATTATTGAAACCCTTGAATTTCACAAGGTAAGACAAAAAATTGAGCCCTATCTCTTGACGGAACAGGG
CTTTGAAGAATTACGCCAGTTGGAACCCATGGTGGAAGTCCATCGTATCCAACAGGCCTTCGATGAGTTGACAGACATAG
CGCAGATTTTTGTGGAAAATCCCTATTTCAGTCTGGCTGCTACTAGTGACATCGGTCCAGCCATGCGTCGTTTGGAATTG
GATACAGACCTCAATATCGCTGAATTATTAGCTGTTAAAAAGGTCTTGGAAGTTTCTAAATCTCTCTTGGATTTTTATGG
AAATCTGGAAAATGTCAGTCTTAGCCAGCTGGATAAACTCTTTGAGAAGATTGAGCTTTTTCCACATTTACAGGGCTCCC
TCCAGTCCATCAATGATGCTGGTTTTGTAGAGGATTTTGCCTCAGAAAAGCTGGCTCGTATTCGAAGAAAAATCCGTGAA
GCTGAAGATCAAGTTCGTCAGGTCATGCAGGATATTTTGAAGACCAAGGGGGACATGCTGTCCGATAGCATTTTGGCAAG
CCGTAATGGACGCAATGTCCTTCCTGTTAAAAATACCTATCGCAATAAAATTGCAGGGGTTGTCCATGATATTTCTGCTT
CGGGTTCGACCGTTTATATTGAGCCGCGGGCAGTGGTGACCTTGAACGAAGAAATCAGTCACCTACGTGCAGAAGAACGC
CATGAGCTCAACCGTATCTTGCAGGAATTGTCGGATATGCTCCGTCCGCATAGTGGCGTGATTCGTAACAATGCCTGGCT
TATCGGGCATATTGATTTCGTCCGTGCTAAGCATCTCTTTGCGCGTGATCATCAAGCAGTTGTACCCAAACTATCTGAGA
AGCAGGATATTGCCCTTCTCAACGTTCGGCATCCGCTCATTGCTAAGCCTGTACCAAATGACCTTTATTTCGGTAGTCAG
TTGACGGCTATCGTGATAACAGGTCCCAACACAGGTGGTAAGACCATCACGCTTAAGACCTTGGGATTGACCCATCTGAT
GGCTCAGTCTGGTTTGCCTATCTTGGCTGATAAGGGCAGTCGAGTAGCTATCTTCAAAGAAATTTTTGCGGATATCGGTG
ATGAACAGTCGATTGAGCAGAGTTTATCAACCTTCTCCAGTCACATGACCCACACGGTGCAGATTTTAGCGGAGGCGGAT
CAAGATTCTCTCATTCTATTTGACGAGTTGGGAGCTGGGACCGATCCGCAGGAGGGGGCATCCTTGGCTATGGCTATTTT
GGATGACCTTCGTCTGCGGGGGATCAAGACCATGGCGACCACCCACTACCCTGAGCTTAAGGCCTACGGGATAGAAACCT
CTGGTATTGAAAATGCCAGCATGGAATTTGATACCAATAGTCTACGACCAACTTATAAATTTATGCAGGGTGTTCCTGGT
CGCTCAAATGCCTTTGAAATTGCCCGCCGTCTTGGTCTATCTGATATTATTATCCAGTCAGCCCAATCTTGGACGGATAC
AGATAGCGATGTGAACCGCATTATCGAGAAATTGGAAAGTCAGACGGTTGAAAGTCGTCAGCGTCTGGATAAGATTCGTG
ATGTGGAGCAAGAAAATTACAAGATGAACCGAGCCCTCCGCAAGCTCTATGACGAGCTCAATCGTGAGCGAGAAAATGAG
CTTAACAAGGCACGCTTGGAGGCCAAGGAAATTGTAGATATGGCATTGGCAGAAAGCGAGGATATTCTCAAAAATCTCCA
TGCTGCAGCTAGTCTTAAGCCCCACCAGATTATTGAAGCCAAGGCAGAGCTGAAAAAGTTGGCGCCTGAAGTGGTGGACC
TGTCTAAAAACAAGGTTCTGAAGAAAGCTAAAATTCAGAGGGAAGCCAAGGTGGGTGATGACATTATCGTTACAGCTTAT
GGACAACGTGGGACCTTGACCAATCAGCTCAAAGATGGACGTTGGGAAGCTCAGGTTGGCTTGATTAAGATGACCTTGGC
CAAGGATGAGTTTGAGTTAGTCAAGGCGGAAAAGGCAGAGCAGCCTAAGAAACGCCAGGTTCACACAGTCAAACGTGCCA
ATGTACGAGGACCAAAAGCCCGCTTAGATCTCCGTGGTAAACGCTACGAAGAGGCTATGATGGAACTGGATGAATTTATC
GATCAGGCCCTTCTCAACAATCTGGCACAAGTAGACATTGTCCACGGTATAGGTACAGGTGTCATCCGAGAAGGGGTGAC
CAAGTACCTACGCCGCAACAAGCAGGTCAAGGAGTTCGGCTACGCTCCACAAAATGCAGGTGGTTCAGGCTGTACTATTG
TGACGTTTAAATAG

Domains

Predicted by InterProScan.

Smr domain (Smr)

(702-777)

MutS2 and Smr-associated SH3 domain (MSSS)

(631-670)

MutS domain V (MutS_V)

(324-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

39.773

100

0.405