Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   RJW55_RS10830 Genome accession   NZ_CP134473
Coordinates   2279728..2280306 (-) Length   192 a.a.
NCBI ID   WP_029188845.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 2274728..2285306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS10820 (RJW55_10820) - 2277950..2278891 (-) 942 WP_172045712.1 substrate-binding domain-containing protein -
  RJW55_RS10825 (RJW55_10825) - 2279292..2279507 (-) 216 Protein_2104 amino acid ABC transporter ATP-binding protein -
  RJW55_RS10830 (RJW55_10830) lytF 2279728..2280306 (-) 579 WP_029188845.1 CHAP domain-containing protein Regulator
  RJW55_RS10835 (RJW55_10835) - 2280633..2282009 (-) 1377 WP_029174130.1 PTS sugar transporter subunit IIC -
  RJW55_RS10840 (RJW55_10840) - 2282053..2282496 (-) 444 WP_029174131.1 DUF3284 domain-containing protein -
  RJW55_RS10845 (RJW55_10845) - 2282533..2282865 (-) 333 WP_002939850.1 PTS lactose/cellobiose transporter subunit IIA -
  RJW55_RS10850 (RJW55_10850) - 2282867..2283178 (-) 312 WP_002939849.1 PTS sugar transporter subunit IIB -
  RJW55_RS10855 (RJW55_10855) - 2283191..2285185 (-) 1995 WP_172045710.1 transcription antiterminator -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20156.75 Da        Isoelectric Point: 6.4608

>NTDB_id=803852 RJW55_RS10830 WP_029188845.1 2279728..2280306(-) (lytF) [Streptococcus suis strain TMW_SS028]
MSYQMIKKQFKLGLFTALIGNLLWFGMVNVSADDTVISDSPTVSALTKKVEAAKKAAKAAAATKAALATNMVSEVAVEYT
ANTYPAGQCTWGAKEMAPWVGNYWGNGGDWAASAAALGYEVGTTPKVGAIAVWTDGGYGHVAYVTDVAANGHIQVKESNY
GGVYYPSNVRGFFDPTTTSEGTVSYIYPPAGV

Nucleotide


Download         Length: 579 bp        

>NTDB_id=803852 RJW55_RS10830 WP_029188845.1 2279728..2280306(-) (lytF) [Streptococcus suis strain TMW_SS028]
ATGAGTTATCAAATGATAAAAAAACAATTCAAATTGGGACTGTTTACAGCCCTCATAGGAAATCTTTTATGGTTCGGAAT
GGTGAATGTCAGTGCAGATGACACAGTTATAAGCGATAGTCCGACAGTATCAGCGTTAACAAAAAAGGTTGAAGCTGCAA
AAAAAGCAGCCAAAGCTGCTGCCGCTACAAAGGCTGCTTTGGCTACCAATATGGTGTCAGAGGTTGCTGTGGAATATACG
GCTAATACCTATCCAGCGGGTCAGTGTACTTGGGGTGCCAAAGAAATGGCTCCTTGGGTTGGAAACTATTGGGGTAATGG
TGGAGATTGGGCAGCTAGTGCGGCAGCGCTTGGATATGAAGTGGGAACTACTCCAAAAGTTGGCGCTATTGCTGTATGGA
CAGATGGAGGCTACGGTCATGTTGCCTATGTAACAGATGTGGCAGCTAACGGTCACATTCAAGTTAAGGAATCAAACTAT
GGTGGAGTATACTACCCAAGTAATGTCCGAGGTTTCTTTGATCCAACAACGACTAGCGAAGGAACAGTCAGCTATATTTA
CCCACCAGCTGGAGTATAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(81-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

66.667

56.25

0.375
  lytF Streptococcus gordonii str. Challis substr. CH1

66.667

56.25

0.375