Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   RJW55_RS03605 Genome accession   NZ_CP134473
Coordinates   751854..752450 (+) Length   198 a.a.
NCBI ID   WP_012027296.1    Uniprot ID   A0A0H3N2W4
Organism   Streptococcus suis strain TMW_SS028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 746854..757450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS03590 (RJW55_03590) - 748140..748781 (+) 642 WP_228475326.1 ATP-binding cassette domain-containing protein -
  RJW55_RS03595 (RJW55_03595) - 748944..749678 (+) 735 WP_043027114.1 ATP-binding cassette domain-containing protein -
  RJW55_RS03600 (RJW55_03600) pbp2b 749770..751845 (+) 2076 WP_172045781.1 penicillin-binding protein PBP2B -
  RJW55_RS03605 (RJW55_03605) recR 751854..752450 (+) 597 WP_012027296.1 recombination mediator RecR Machinery gene
  RJW55_RS03610 (RJW55_03610) - 752555..753601 (+) 1047 WP_172045783.1 D-alanine--D-alanine ligase -
  RJW55_RS03615 (RJW55_03615) - 753703..754083 (+) 381 WP_044766415.1 OsmC family protein -
  RJW55_RS03620 (RJW55_03620) - 754085..755161 (+) 1077 WP_125177128.1 ABC transporter permease -
  RJW55_RS03625 (RJW55_03625) - 755171..755829 (+) 659 Protein_680 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21707.83 Da        Isoelectric Point: 4.4829

>NTDB_id=803799 RJW55_RS03605 WP_012027296.1 751854..752450(+) (recR) [Streptococcus suis strain TMW_SS028]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMENEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=803799 RJW55_RS03605 WP_012027296.1 751854..752450(+) (recR) [Streptococcus suis strain TMW_SS028]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACGGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGATATTAACCTGAAAACTCTGCTGACCCGCCTGATGGAAA
ATGAGGTGACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAAGCTACATCCATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAATCGTACAGAGCTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N2W4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49