Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3U46_RS13615 Genome accession   NZ_CP120148
Coordinates   2695945..2696472 (-) Length   175 a.a.
NCBI ID   WP_025906200.1    Uniprot ID   A0A1X0TQ72
Organism   Mammaliicoccus sciuri strain Dog029_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2690945..2701472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U46_RS13580 (P3U46_13580) - 2691440..2692243 (+) 804 WP_070368814.1 hypothetical protein -
  P3U46_RS13585 (P3U46_13585) - 2692288..2693178 (-) 891 WP_323707795.1 PhzF family phenazine biosynthesis protein -
  P3U46_RS13590 (P3U46_13590) - 2693218..2693622 (-) 405 WP_065381394.1 nucleoside 2-deoxyribosyltransferase -
  P3U46_RS13595 (P3U46_13595) - 2693648..2694070 (-) 423 WP_065381395.1 nucleotidyltransferase family protein -
  P3U46_RS13600 (P3U46_13600) - 2694283..2694639 (+) 357 WP_081335223.1 hypothetical protein -
  P3U46_RS13605 (P3U46_13605) - 2695079..2695546 (+) 468 WP_323705036.1 hypothetical protein -
  P3U46_RS13610 (P3U46_13610) rpsR 2695643..2695885 (-) 243 WP_025906198.1 30S ribosomal protein S18 -
  P3U46_RS13615 (P3U46_13615) ssbA 2695945..2696472 (-) 528 WP_025906200.1 single-stranded DNA-binding protein Machinery gene
  P3U46_RS13620 (P3U46_13620) rpsF 2696500..2696793 (-) 294 WP_025906202.1 30S ribosomal protein S6 -
  P3U46_RS13625 (P3U46_13625) ychF 2696965..2698065 (-) 1101 WP_048542912.1 redox-regulated ATPase YchF -
  P3U46_RS13630 (P3U46_13630) - 2698069..2698266 (-) 198 WP_025906204.1 DUF951 domain-containing protein -
  P3U46_RS13635 (P3U46_13635) - 2698290..2699174 (-) 885 WP_049320694.1 mechanosensitive ion channel family protein -
  P3U46_RS13640 (P3U46_13640) - 2699186..2700022 (-) 837 WP_216698673.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19589.21 Da        Isoelectric Point: 4.7512

>NTDB_id=803790 P3U46_RS13615 WP_025906200.1 2695945..2696472(-) (ssbA) [Mammaliicoccus sciuri strain Dog029_2]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=803790 P3U46_RS13615 WP_025906200.1 2695945..2696472(-) (ssbA) [Mammaliicoccus sciuri strain Dog029_2]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAACCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGACAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAACCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AACGCTAATGGCCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X0TQ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.222

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

52.514

100

0.537