Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RJW56_RS06760 Genome accession   NZ_CP134472
Coordinates   1383108..1383773 (+) Length   221 a.a.
NCBI ID   WP_009909826.1    Uniprot ID   -
Organism   Streptococcus suis strain 1522228     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1378108..1388773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW56_RS06730 (RJW56_06730) - 1378150..1378896 (+) 747 WP_024394862.1 ABC transporter permease -
  RJW56_RS06735 (RJW56_06735) - 1378898..1379632 (+) 735 WP_011922410.1 ABC transporter permease -
  RJW56_RS06740 (RJW56_06740) - 1379768..1380520 (+) 753 WP_002935019.1 ABC transporter ATP-binding protein -
  RJW56_RS06745 (RJW56_06745) - 1380521..1382491 (+) 1971 WP_024394861.1 FtsX-like permease family protein -
  RJW56_RS06750 (RJW56_06750) relB 1382583..1382822 (+) 240 WP_002935014.1 type II toxin-antitoxin system RelB family antitoxin -
  RJW56_RS06755 (RJW56_06755) - 1382863..1383069 (+) 207 WP_370287028.1 type II toxin-antitoxin system RelE/ParE family toxin -
  RJW56_RS06760 (RJW56_06760) braR 1383108..1383773 (+) 666 WP_009909826.1 response regulator transcription factor Regulator
  RJW56_RS06765 (RJW56_06765) - 1383770..1384711 (+) 942 WP_002935009.1 sensor histidine kinase -
  RJW56_RS06770 (RJW56_06770) - 1384787..1386295 (+) 1509 WP_013730362.1 phosphoglucomutase -
  RJW56_RS06775 (RJW56_06775) xerS 1386365..1387435 (-) 1071 WP_002935006.1 tyrosine recombinase XerS Machinery gene
  RJW56_RS06780 (RJW56_06780) - 1387601..1388122 (-) 522 WP_002935005.1 AAA family ATPase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25459.28 Da        Isoelectric Point: 4.7792

>NTDB_id=803728 RJW56_RS06760 WP_009909826.1 1383108..1383773(+) (braR) [Streptococcus suis strain 1522228]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSNELEQVQLSPTETKILS
ALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=803728 RJW56_RS06760 WP_009909826.1 1383108..1383773(+) (braR) [Streptococcus suis strain 1522228]
ATGAAAAAAGAGAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAGCTCTTGAAGCAGCATTTGGGAAAATCGTA
TCAGGTGGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTCGCTGAAATCAAACCAGACTTGGTGCTGATGGACA
TTAGCCTGCCTTATTACAACGGTTTTTACTGGACGACAGAAATCCGTAAAACCATGACCATGCCCATTATCTTTATCTCC
TCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTGTCTAAGCCGTTTTCTCTGGG
GATTTTGGATGCCAAAATCGGCGCCTTCTTGCGTCGGGTTAATCAATTCAGCAAATCAACTGATTTGTCAATTGACCAGT
TCCAACTTAGTTTAGACGGGCGATTTTCAAACGAATTGGAACAGGTTCAATTGTCTCCTACGGAAACCAAGATTTTGTCC
GCCTTACTAGAAAGACAAGGGCAGATTGTCAGCAAGGAAGAACTCCTGGAAAAACTCTGGGAAAATGAAGAATTTATTGA
CCAGAACACGCTCAATGTCAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACGGTTC
GTGGCGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)

Response regulator receiver domain (Response_reg)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.273

99.548

0.471