Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3U20_RS14310 Genome accession   NZ_CP120146
Coordinates   2814428..2814955 (-) Length   175 a.a.
NCBI ID   WP_025906200.1    Uniprot ID   A0A1X0TQ72
Organism   Mammaliicoccus sciuri strain Dog031     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2804134..2814955 2814428..2814955 within 0


Gene organization within MGE regions


Location: 2804134..2814955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U20_RS14225 (P3U20_14225) - 2804134..2804463 (-) 330 WP_323705496.1 sigma factor-like helix-turn-helix DNA-binding protein -
  P3U20_RS14230 (P3U20_14230) - 2804451..2804927 (-) 477 WP_323705497.1 pathogenicity island protein -
  P3U20_RS14235 (P3U20_14235) - 2804946..2805416 (-) 471 WP_152291750.1 terminase small subunit -
  P3U20_RS14240 (P3U20_14240) - 2805473..2806099 (-) 627 WP_323705498.1 hypothetical protein -
  P3U20_RS14245 (P3U20_14245) - 2806099..2806464 (-) 366 WP_204256192.1 pathogenicity island protein -
  P3U20_RS14250 (P3U20_14250) - 2806550..2806876 (-) 327 WP_204194668.1 hypothetical protein -
  P3U20_RS14255 (P3U20_14255) - 2807218..2808876 (-) 1659 WP_323705716.1 DUF927 domain-containing protein -
  P3U20_RS14260 (P3U20_14260) - 2808879..2809739 (-) 861 WP_323705499.1 primase alpha helix C-terminal domain-containing protein -
  P3U20_RS14265 (P3U20_14265) - 2809798..2809989 (-) 192 WP_204170312.1 hypothetical protein -
  P3U20_RS14270 (P3U20_14270) - 2809990..2810337 (-) 348 WP_204170311.1 hypothetical protein -
  P3U20_RS14275 (P3U20_14275) - 2810327..2810584 (-) 258 WP_204170310.1 hypothetical protein -
  P3U20_RS14280 (P3U20_14280) - 2810599..2810871 (-) 273 WP_204174913.1 helix-turn-helix domain-containing protein -
  P3U20_RS14285 (P3U20_14285) - 2810837..2811094 (-) 258 WP_204174911.1 helix-turn-helix transcriptional regulator -
  P3U20_RS14290 (P3U20_14290) - 2811259..2811915 (+) 657 WP_204174909.1 helix-turn-helix domain-containing protein -
  P3U20_RS14295 (P3U20_14295) - 2811921..2813144 (+) 1224 WP_323705500.1 site-specific integrase -
  P3U20_RS14300 (P3U20_14300) - 2813147..2813866 (+) 720 WP_323705501.1 DUF3800 domain-containing protein -
  P3U20_RS14305 (P3U20_14305) rpsR 2814126..2814368 (-) 243 WP_025906198.1 30S ribosomal protein S18 -
  P3U20_RS14310 (P3U20_14310) ssbA 2814428..2814955 (-) 528 WP_025906200.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19589.21 Da        Isoelectric Point: 4.7512

>NTDB_id=803728 P3U20_RS14310 WP_025906200.1 2814428..2814955(-) (ssbA) [Mammaliicoccus sciuri strain Dog031]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=803728 P3U20_RS14310 WP_025906200.1 2814428..2814955(-) (ssbA) [Mammaliicoccus sciuri strain Dog031]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAACCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGACAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAATCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AACGCTAATGGCCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X0TQ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.222

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

52.514

100

0.537