Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   RJW56_RS04510 Genome accession   NZ_CP134472
Coordinates   927353..927949 (+) Length   198 a.a.
NCBI ID   WP_002935848.1    Uniprot ID   A0ABV2ES67
Organism   Streptococcus suis strain 1522228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 922353..932949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW56_RS04495 (RJW56_04495) vicX 923364..924167 (+) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  RJW56_RS04500 (RJW56_04500) - 924728..925177 (+) 450 WP_024394418.1 ATP-binding cassette domain-containing protein -
  RJW56_RS04505 (RJW56_04505) pbp2b 925269..927344 (+) 2076 WP_024394417.1 penicillin-binding protein PBP2B -
  RJW56_RS04510 (RJW56_04510) recR 927353..927949 (+) 597 WP_002935848.1 recombination mediator RecR Machinery gene
  RJW56_RS04515 (RJW56_04515) - 928054..929100 (+) 1047 WP_024394416.1 D-alanine--D-alanine ligase -
  RJW56_RS04520 (RJW56_04520) - 929188..929568 (+) 381 WP_024382539.1 OsmC family protein -
  RJW56_RS04525 (RJW56_04525) murF 929697..931058 (+) 1362 WP_024394415.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  RJW56_RS04530 (RJW56_04530) - 931149..931847 (+) 699 WP_012775213.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21693.80 Da        Isoelectric Point: 4.4757

>NTDB_id=803712 RJW56_RS04510 WP_002935848.1 927353..927949(+) (recR) [Streptococcus suis strain 1522228]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=803712 RJW56_RS04510 WP_002935848.1 927353..927949(+) (recR) [Streptococcus suis strain 1522228]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGATATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAATCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49