Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RJW56_RS02155 Genome accession   NZ_CP134472
Coordinates   435211..435852 (+) Length   213 a.a.
NCBI ID   WP_024394813.1    Uniprot ID   -
Organism   Streptococcus suis strain 1522228     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 430211..440852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW56_RS02135 (RJW56_02135) - 430379..431116 (+) 738 WP_012774983.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  RJW56_RS02140 (RJW56_02140) stkP 431116..433110 (+) 1995 WP_009909429.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  RJW56_RS02145 (RJW56_02145) liaF 433567..434226 (+) 660 WP_225533322.1 cell wall-active antibiotics response protein LiaF -
  RJW56_RS02150 (RJW56_02150) - 434223..435239 (+) 1017 WP_002937028.1 sensor histidine kinase -
  RJW56_RS02155 (RJW56_02155) vraR 435211..435852 (+) 642 WP_024394813.1 response regulator transcription factor Regulator
  RJW56_RS02160 (RJW56_02160) - 435902..437302 (+) 1401 WP_024394814.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  RJW56_RS02165 (RJW56_02165) - 437304..437675 (+) 372 WP_024394815.1 S1 RNA-binding domain-containing protein -
  RJW56_RS02170 (RJW56_02170) - 437701..437961 (-) 261 Protein_391 cysteine synthase A -
  RJW56_RS02175 (RJW56_02175) - 438008..438855 (+) 848 WP_141669245.1 IS630 family transposase -
  RJW56_RS02180 (RJW56_02180) - 438857..439525 (-) 669 Protein_393 PLP-dependent cysteine synthase family protein -
  RJW56_RS02185 (RJW56_02185) - 439615..440247 (-) 633 WP_172051312.1 YigZ family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23804.39 Da        Isoelectric Point: 4.8970

>NTDB_id=803692 RJW56_RS02155 WP_024394813.1 435211..435852(+) (vraR) [Streptococcus suis strain 1522228]
MNTIRVMLVDDHEMVRLGLKSYLNLQPDVEVVAEASDGEEGLAKALEVKPDVIVMDLVMPKMTGVEATLALLKEWPQAQI
VILTSYLDNEKIYPVLEAGARGYMLKTSSADEILAAIRKVALGEYAIETEVEKKVEHHKRHPDLHDDLTAREREILTLLA
KGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHGLVAQEDQ

Nucleotide


Download         Length: 642 bp        

>NTDB_id=803692 RJW56_RS02155 WP_024394813.1 435211..435852(+) (vraR) [Streptococcus suis strain 1522228]
ATGAATACGATTCGAGTGATGCTGGTTGACGACCATGAGATGGTTCGTCTAGGATTGAAAAGTTACTTAAATTTACAGCC
AGATGTTGAAGTAGTTGCAGAAGCTAGTGATGGCGAGGAAGGTTTGGCTAAAGCATTAGAGGTTAAACCCGATGTTATAG
TGATGGACTTGGTTATGCCCAAGATGACTGGCGTAGAAGCAACCCTGGCCTTGCTGAAGGAATGGCCGCAAGCGCAGATT
GTCATCCTGACCTCCTACCTAGATAATGAAAAAATCTATCCTGTGCTGGAAGCAGGAGCTCGTGGTTATATGTTGAAAAC
GTCAAGTGCTGACGAAATCTTAGCAGCCATCCGCAAGGTAGCTCTTGGAGAATATGCTATTGAGACAGAAGTAGAGAAAA
AAGTAGAGCACCATAAACGCCACCCAGATTTACATGATGACTTGACAGCTCGTGAACGCGAAATCTTGACGCTGTTAGCC
AAGGGATATGATAATCAACGAATTGCAGATGAGTCCTTCATATCCTTAAAAACTGTTAAGACCCATGTTTCCAATATCTT
ATCCAAACTAGCTGTTAGCGATCGTACTCAAGCAGTTGTTTATGCTTTCCAGCATGGTTTGGTGGCGCAAGAGGACCAAT
AG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-202)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

55.072

97.183

0.535
  degU Bacillus subtilis subsp. subtilis str. 168

38.496

100

0.408