Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   P3U55_RS08040 Genome accession   NZ_CP120141
Coordinates   1643350..1644036 (-) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Dog035_1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1638350..1649036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U55_RS08020 (P3U55_08020) rpsT 1639264..1639515 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  P3U55_RS08025 (P3U55_08025) holA 1639560..1640534 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  P3U55_RS08030 (P3U55_08030) comEC 1640591..1642792 (-) 2202 WP_001804765.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P3U55_RS08035 (P3U55_08035) - 1642797..1643258 (-) 462 WP_000439693.1 ComE operon protein 2 -
  P3U55_RS08040 (P3U55_08040) comEA 1643350..1644036 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  P3U55_RS08045 (P3U55_08045) - 1644076..1644792 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  P3U55_RS08050 (P3U55_08050) rsfS 1644795..1645148 (-) 354 WP_320409479.1 ribosome silencing factor -
  P3U55_RS08055 (P3U55_08055) yqeK 1645149..1645733 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  P3U55_RS08060 (P3U55_08060) nadD 1645723..1646292 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  P3U55_RS08065 (P3U55_08065) yhbY 1646295..1646585 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  P3U55_RS08070 (P3U55_08070) aroE 1646589..1647395 (-) 807 WP_072497282.1 shikimate dehydrogenase -
  P3U55_RS08075 (P3U55_08075) yqeH 1647409..1648509 (-) 1101 WP_072497283.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=803639 P3U55_RS08040 WP_001788928.1 1643350..1644036(-) (comEA) [Staphylococcus aureus strain Dog035_1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=803639 P3U55_RS08040 WP_001788928.1 1643350..1644036(-) (comEA) [Staphylococcus aureus strain Dog035_1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969