Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3U33_RS15230 Genome accession   NZ_CP120139
Coordinates   2930217..2930744 (-) Length   175 a.a.
NCBI ID   WP_025906200.1    Uniprot ID   A0A1X0TQ72
Organism   Mammaliicoccus sciuri strain Dog036     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2918651..2929774 2930217..2930744 flank 443


Gene organization within MGE regions


Location: 2918651..2930744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U33_RS15145 (P3U33_15150) - 2918651..2918980 (-) 330 WP_323709257.1 sigma factor-like helix-turn-helix DNA-binding protein -
  P3U33_RS15150 (P3U33_15155) - 2918968..2919444 (-) 477 WP_323709258.1 pathogenicity island protein -
  P3U33_RS15155 (P3U33_15160) - 2919456..2921378 (-) 1923 WP_323709259.1 glucosaminidase domain-containing protein -
  P3U33_RS15160 (P3U33_15165) - 2921400..2921870 (-) 471 WP_323709260.1 terminase small subunit -
  P3U33_RS15165 (P3U33_15170) - 2921927..2922553 (-) 627 WP_204177046.1 hypothetical protein -
  P3U33_RS15170 (P3U33_15175) - 2922553..2922918 (-) 366 WP_204169229.1 pathogenicity island protein -
  P3U33_RS15175 (P3U33_15180) - 2923004..2923357 (-) 354 WP_204170314.1 hypothetical protein -
  P3U33_RS15180 (P3U33_15185) - 2923664..2925328 (-) 1665 WP_323709261.1 DUF927 domain-containing protein -
  P3U33_RS15185 (P3U33_15190) - 2925335..2926186 (-) 852 WP_323709262.1 primase alpha helix C-terminal domain-containing protein -
  P3U33_RS15190 (P3U33_15195) - 2926245..2926439 (-) 195 WP_323709263.1 hypothetical protein -
  P3U33_RS15195 (P3U33_15200) - 2926432..2926728 (-) 297 WP_323709264.1 DUF1474 family protein -
  P3U33_RS15200 (P3U33_15205) - 2926744..2927016 (-) 273 WP_204182994.1 helix-turn-helix domain-containing protein -
  P3U33_RS15205 (P3U33_15210) - 2926982..2927227 (-) 246 WP_204254648.1 helix-turn-helix domain-containing protein -
  P3U33_RS15210 (P3U33_15215) - 2927415..2927960 (+) 546 WP_323709265.1 helix-turn-helix transcriptional regulator -
  P3U33_RS15215 (P3U33_15220) - 2927981..2929204 (+) 1224 WP_323709266.1 site-specific integrase -
  P3U33_RS15220 (P3U33_15225) - 2929205..2929774 (+) 570 WP_239702954.1 hypothetical protein -
  P3U33_RS15225 (P3U33_15230) rpsR 2929915..2930157 (-) 243 WP_025906198.1 30S ribosomal protein S18 -
  P3U33_RS15230 (P3U33_15235) ssbA 2930217..2930744 (-) 528 WP_025906200.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19589.21 Da        Isoelectric Point: 4.7512

>NTDB_id=803580 P3U33_RS15230 WP_025906200.1 2930217..2930744(-) (ssbA) [Mammaliicoccus sciuri strain Dog036]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=803580 P3U33_RS15230 WP_025906200.1 2930217..2930744(-) (ssbA) [Mammaliicoccus sciuri strain Dog036]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAACCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGACAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAACCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AACGCTAATGGCCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X0TQ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.222

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

52.514

100

0.537