Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RJ643_RS06645 Genome accession   NZ_CP134389
Coordinates   1366475..1367212 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain TUM10828     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1361475..1372212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ643_RS06615 (RJ643_06615) yfiL 1361634..1361999 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  RJ643_RS06620 (RJ643_06620) aroF 1362208..1363278 (+) 1071 WP_001168043.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  RJ643_RS06625 (RJ643_06625) tyrA 1363289..1364410 (+) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  RJ643_RS06630 (RJ643_06630) pheA 1364453..1365613 (-) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  RJ643_RS06635 (RJ643_06635) pheL 1365712..1365759 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  RJ643_RS06640 (RJ643_06640) raiA 1365863..1366204 (-) 342 WP_000178463.1 ribosome-associated translation inhibitor RaiA -
  RJ643_RS06645 (RJ643_06645) comL 1366475..1367212 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  RJ643_RS06650 (RJ643_06650) rluD 1367347..1368327 (+) 981 WP_000079106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RJ643_RS06655 (RJ643_06655) yfiH 1368324..1369055 (+) 732 WP_000040163.1 purine nucleoside phosphorylase YfiH -
  RJ643_RS06660 (RJ643_06660) clpC 1369185..1371758 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=803410 RJ643_RS06645 WP_000197686.1 1366475..1367212(-) (comL) [Escherichia coli strain TUM10828]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=803410 RJ643_RS06645 WP_000197686.1 1366475..1367212(-) (comL) [Escherichia coli strain TUM10828]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAACCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376