Detailed information NTG0803341

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: P3U26_RS13915
• Genome accession: NZ_CP120129
• Coordinates: 2755693..2756220 (-)
• Length: 175 a.a.
• NCBI ID: WP_025906200.1
• Uniprot ID: A0A1X0TQ72
• Organism: Mammaliicoccus sciuri strain Dog048
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	2745798..2755290	2755693..2756220	flank	403

Gene organization within MGE regions

Location: 2745798..2756220

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3U26_RS13845 (P3U26_13845)	-	2745798..2746127 (-)	330	WP_216698653.1	sigma factor-like helix-turn-helix DNA-binding protein	-
P3U26_RS13850 (P3U26_13850)	-	2746131..2746592 (-)	462	WP_323708573.1	pathogenicity island protein	-
P3U26_RS13855 (P3U26_13855)	-	2746611..2747081 (-)	471	WP_323708574.1	terminase small subunit	-
P3U26_RS13860 (P3U26_13860)	-	2747138..2747764 (-)	627	WP_323708575.1	hypothetical protein	-
P3U26_RS13865 (P3U26_13865)	-	2747764..2748129 (-)	366	WP_198054419.1	pathogenicity island protein	-
P3U26_RS13870 (P3U26_13870)	-	2748216..2748539 (-)	324	WP_323708576.1	hypothetical protein	-
P3U26_RS13875 (P3U26_13875)	-	2748849..2751224 (-)	2376	WP_323708577.1	phage/plasmid primase, P4 family	-
P3U26_RS13880 (P3U26_13880)	-	2751471..2751767 (-)	297	WP_323708578.1	DUF1474 family protein	-
P3U26_RS13885 (P3U26_13885)	-	2751783..2752055 (-)	273	WP_323708579.1	helix-turn-helix domain-containing protein	-
P3U26_RS13890 (P3U26_13890)	-	2752087..2752296 (-)	210	WP_323708580.1	hypothetical protein	-
P3U26_RS13895 (P3U26_13895)	-	2752453..2753373 (+)	921	WP_323708581.1	helix-turn-helix transcriptional regulator	-
P3U26_RS13900 (P3U26_13900)	-	2753379..2754602 (+)	1224	WP_323708582.1	site-specific integrase	-
P3U26_RS13905 (P3U26_13905)	-	2754604..2755290 (+)	687	WP_323708583.1	hypothetical protein	-
P3U26_RS13910 (P3U26_13910)	rpsR	2755391..2755633 (-)	243	WP_025906198.1	30S ribosomal protein S18	-
P3U26_RS13915 (P3U26_13915)	ssbA	2755693..2756220 (-)	528	WP_025906200.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 175 a.a.
• Molecular weight: 19589.21 Da
• Isoelectric Point: 4.7512

>NTDB_id=803341 P3U26_RS13915 WP_025906200.1 2755693..2756220(-) (ssbA) [Mammaliicoccus sciuri strain Dog048]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF

Nucleotide

• Length: 528 bp

>NTDB_id=803341 P3U26_RS13915 WP_025906200.1 2755693..2756220(-) (ssbA) [Mammaliicoccus sciuri strain Dog048]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAACCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGACAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAACCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AACGCTAATGGCCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A1X0TQ72

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	62.222	100	0.64
ssb	Latilactobacillus sakei subsp. sakei 23K	52.514	100	0.537