Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   P3U19_RS04560 Genome accession   NZ_CP120128
Coordinates   943123..944109 (+) Length   328 a.a.
NCBI ID   WP_043044629.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Dog049     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 938123..949109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U19_RS04535 (P3U19_04535) opp4B 938336..939298 (+) 963 WP_072466691.1 oligopeptide ABC transporter permease -
  P3U19_RS04540 (P3U19_04540) opp4C 939310..940191 (+) 882 Protein_884 oligopeptide ABC transporter permease -
  P3U19_RS04545 (P3U19_04545) trpS 940233..941222 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  P3U19_RS04550 (P3U19_04550) spxA 941517..941912 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  P3U19_RS04555 (P3U19_04555) mecA 942283..943002 (+) 720 WP_001217730.1 adaptor protein MecA -
  P3U19_RS04560 (P3U19_04560) coiA 943123..944109 (+) 987 WP_043044629.1 competence protein CoiA Machinery gene
  P3U19_RS04565 (P3U19_04565) pepF 944157..945965 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  P3U19_RS04570 (P3U19_04570) yjbH 946425..947231 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  P3U19_RS04575 (P3U19_04575) - 947254..947619 (-) 366 WP_000214068.1 truncated hemoglobin YjbI -
  P3U19_RS04580 (P3U19_04580) - 947723..948316 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  P3U19_RS04585 (P3U19_04585) - 948502..948849 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38794.40 Da        Isoelectric Point: 9.5881

>NTDB_id=803278 P3U19_RS04560 WP_043044629.1 943123..944109(+) (coiA) [Staphylococcus aureus strain Dog049]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=803278 P3U19_RS04560 WP_043044629.1 943123..944109(+) (coiA) [Staphylococcus aureus strain Dog049]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTATTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982