Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   P3U19_RS02600 Genome accession   NZ_CP120128
Coordinates   545947..546516 (+) Length   189 a.a.
NCBI ID   WP_043044723.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Dog049     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 540947..551516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U19_RS02575 (P3U19_02575) cysE 542160..542807 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  P3U19_RS02580 (P3U19_02580) cysS 542791..544191 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  P3U19_RS02585 (P3U19_02585) - 544184..544588 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  P3U19_RS02590 (P3U19_02590) rlmB 544596..545342 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  P3U19_RS02595 (P3U19_02595) - 545342..545866 (+) 525 WP_000664732.1 NYN domain-containing protein -
  P3U19_RS02600 (P3U19_02600) sigH 545947..546516 (+) 570 WP_043044723.1 sigma-70 family RNA polymerase sigma factor Regulator
  P3U19_RS02605 (P3U19_02605) rpmG 546631..546774 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  P3U19_RS02610 (P3U19_02610) secE 546830..547012 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  P3U19_RS02615 (P3U19_02615) nusG 547025..547573 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  P3U19_RS02620 (P3U19_02620) rplK 547754..548176 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  P3U19_RS02625 (P3U19_02625) rplA 548384..549076 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  P3U19_RS02630 (P3U19_02630) rplJ 549348..549848 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  P3U19_RS02635 (P3U19_02635) rplL 549891..550259 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  P3U19_RS02640 (P3U19_02640) - 550434..551042 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23067.89 Da        Isoelectric Point: 9.5047

>NTDB_id=803273 P3U19_RS02600 WP_043044723.1 545947..546516(+) (sigH) [Staphylococcus aureus strain Dog049]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVAYPCAIKRYDVENNYLNQLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=803273 P3U19_RS02600 WP_043044723.1 545947..546516(+) (sigH) [Staphylococcus aureus strain Dog049]
TTGAAATATGATTTGACAACGCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTGCGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATCAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974