Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3U34_RS14115 Genome accession   NZ_CP120106
Coordinates   2775937..2776464 (-) Length   175 a.a.
NCBI ID   WP_025906200.1    Uniprot ID   A0A1X0TQ72
Organism   Mammaliicoccus sciuri strain Dog108     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2770937..2781464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U34_RS14080 (P3U34_14080) - 2771433..2772236 (+) 804 WP_070368814.1 hypothetical protein -
  P3U34_RS14085 (P3U34_14085) - 2772281..2773171 (-) 891 WP_070368813.1 PhzF family phenazine biosynthesis protein -
  P3U34_RS14090 (P3U34_14090) - 2773211..2773609 (-) 399 WP_323706609.1 nucleoside 2-deoxyribosyltransferase -
  P3U34_RS14095 (P3U34_14095) - 2773640..2774062 (-) 423 WP_065381395.1 nucleotidyltransferase family protein -
  P3U34_RS14100 (P3U34_14100) - 2774275..2774631 (+) 357 WP_081335223.1 hypothetical protein -
  P3U34_RS14105 (P3U34_14105) - 2775071..2775538 (+) 468 WP_323705036.1 hypothetical protein -
  P3U34_RS14110 (P3U34_14110) rpsR 2775635..2775877 (-) 243 WP_025906198.1 30S ribosomal protein S18 -
  P3U34_RS14115 (P3U34_14115) ssbA 2775937..2776464 (-) 528 WP_025906200.1 single-stranded DNA-binding protein Machinery gene
  P3U34_RS14120 (P3U34_14120) rpsF 2776492..2776785 (-) 294 WP_025906202.1 30S ribosomal protein S6 -
  P3U34_RS14125 (P3U34_14125) ychF 2776957..2778057 (-) 1101 WP_065381396.1 redox-regulated ATPase YchF -
  P3U34_RS14130 (P3U34_14130) - 2778061..2778258 (-) 198 WP_025906204.1 DUF951 domain-containing protein -
  P3U34_RS14135 (P3U34_14135) - 2778282..2779166 (-) 885 WP_049320694.1 mechanosensitive ion channel family protein -
  P3U34_RS14140 (P3U34_14140) - 2779178..2780014 (-) 837 WP_065381397.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19589.21 Da        Isoelectric Point: 4.7512

>NTDB_id=802988 P3U34_RS14115 WP_025906200.1 2775937..2776464(-) (ssbA) [Mammaliicoccus sciuri strain Dog108]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=802988 P3U34_RS14115 WP_025906200.1 2775937..2776464(-) (ssbA) [Mammaliicoccus sciuri strain Dog108]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAACCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGACAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAATCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AACGCTAATGGCCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X0TQ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.222

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

52.514

100

0.537