Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P3T86_RS04465 Genome accession   NZ_CP120099
Coordinates   982742..983161 (+) Length   139 a.a.
NCBI ID   WP_119487779.1    Uniprot ID   -
Organism   Staphylococcus nepalensis strain Dog109     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 977742..988161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T86_RS04440 (P3T86_04440) - 978949..979353 (+) 405 WP_096808789.1 F0F1 ATP synthase subunit epsilon -
  P3T86_RS04445 (P3T86_04445) - 979746..979979 (+) 234 WP_096808790.1 DUF1146 family protein -
  P3T86_RS04450 (P3T86_04450) murA 980079..981344 (+) 1266 WP_096808791.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  P3T86_RS04455 (P3T86_04455) fabZ 981402..981842 (+) 441 WP_096808792.1 3-hydroxyacyl-ACP dehydratase FabZ -
  P3T86_RS04460 (P3T86_04460) - 982112..982552 (-) 441 WP_096808793.1 YwpF-like family protein -
  P3T86_RS04465 (P3T86_04465) ssb 982742..983161 (+) 420 WP_119487779.1 single-stranded DNA-binding protein Machinery gene
  P3T86_RS04470 (P3T86_04470) - 983582..984271 (+) 690 WP_115342031.1 transglycosylase family protein -
  P3T86_RS04475 (P3T86_04475) tenA 984735..985415 (+) 681 WP_096808796.1 thiaminase II -
  P3T86_RS04480 (P3T86_04480) thiD 985417..986238 (+) 822 WP_119487778.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  P3T86_RS04485 (P3T86_04485) thiM 986231..987016 (+) 786 WP_107644187.1 hydroxyethylthiazole kinase -
  P3T86_RS04490 (P3T86_04490) thiE 987019..987657 (+) 639 WP_107644183.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16072.49 Da        Isoelectric Point: 6.4697

>NTDB_id=802929 P3T86_RS04465 WP_119487779.1 982742..983161(+) (ssb) [Staphylococcus nepalensis strain Dog109]
MINSIVIVGRLTKDPKIYEKEGNKRATFCVAVSRNYKDKNQKIVCDYLFCKAFGKMANNVEKYISQGSLVGITGQMQSRK
FEKEGQMHFVSELFIETIQFMSPRIKKEAEAFFEPPTIETNEPSISEFHLEENDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=802929 P3T86_RS04465 WP_119487779.1 982742..983161(+) (ssb) [Staphylococcus nepalensis strain Dog109]
ATGATTAATAGCATTGTCATTGTAGGGCGACTAACAAAGGACCCTAAAATATATGAGAAGGAGGGGAATAAACGAGCCAC
ATTTTGTGTAGCTGTATCTAGAAATTATAAGGATAAAAATCAAAAAATTGTTTGTGATTATTTATTTTGTAAAGCTTTTG
GAAAAATGGCTAATAATGTTGAAAAATATATCAGCCAAGGTTCACTTGTTGGTATAACAGGACAGATGCAATCACGTAAA
TTTGAAAAAGAAGGACAGATGCACTTTGTATCAGAGCTTTTTATTGAAACCATTCAATTCATGTCCCCACGTATTAAAAA
GGAAGCAGAAGCATTTTTTGAACCACCGACTATAGAAACAAATGAACCATCTATAAGTGAATTCCATTTAGAAGAAAATG
ATATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

72.115

74.82

0.54
  ssb Staphylococcus aureus MW2

71.154

74.82

0.532