Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   P3T86_RS00240 Genome accession   NZ_CP120099
Coordinates   53748..55376 (-) Length   542 a.a.
NCBI ID   WP_071331188.1    Uniprot ID   -
Organism   Staphylococcus nepalensis strain Dog109     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 48748..60376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T86_RS00210 (P3T86_00210) - 49267..49893 (+) 627 Protein_39 glycosyltransferase family 2 protein -
  P3T86_RS00215 (P3T86_00215) - 49879..51428 (+) 1550 Protein_40 type I restriction endonuclease subunit R -
  P3T86_RS00220 (P3T86_00220) - 51478..51681 (-) 204 WP_119521786.1 hypothetical protein -
  P3T86_RS00225 (P3T86_00225) - 52007..52513 (-) 507 WP_107628103.1 DUF1643 domain-containing protein -
  P3T86_RS00230 (P3T86_00230) - 52529..52840 (-) 312 WP_046207795.1 DUF960 family protein -
  P3T86_RS00235 (P3T86_00235) - 52936..53274 (-) 339 WP_011302037.1 SAUGI family uracil-DNA glycosylase inhibitor -
  P3T86_RS00240 (P3T86_00240) ccrB 53748..55376 (-) 1629 WP_071331188.1 cassette chromosome recombinase CcrB Machinery gene
  P3T86_RS00245 (P3T86_00245) ccrA 55397..56746 (-) 1350 WP_207606747.1 cassette chromosome recombinase CcrA Machinery gene
  P3T86_RS00250 (P3T86_00250) - 56938..57213 (-) 276 WP_038679385.1 hypothetical protein -
  P3T86_RS00255 (P3T86_00255) cch1 57284..59074 (-) 1791 WP_207606748.1 cassette chromosome replicative helicase -
  P3T86_RS00260 (P3T86_00260) - 59074..59223 (-) 150 WP_167330439.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62234.30 Da        Isoelectric Point: 9.8082

>NTDB_id=802924 P3T86_RS00240 WP_071331188.1 53748..55376(-) (ccrB) [Staphylococcus nepalensis strain Dog109]
MKEMKRKSVGCYVRVSTISQDIDKFSINGQITQIKEYCQFHGYEVFDIYADRGVSGKTMNRPELQRMLKDAKEGKLDCVM
IYKTSRLARNTSDLLTIVEGLHKQNVEFFSLSENMKFDSNSGKLLLQILASFSEFERNNIAEGAYMGQLRRSQEGYYQGN
LPLAYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHTPIISQSLWDKVQARKKQVSEKPQVHGKGTNILTGLISCPQCSAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSNKVLKQVVERVNQENQVDVAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLASTLKPTIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKQIALLLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLPQTIFLQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=802924 P3T86_RS00240 WP_071331188.1 53748..55376(-) (ccrB) [Staphylococcus nepalensis strain Dog109]
ATGAAAGAAATGAAAAGAAAATCTGTAGGATGTTATGTTAGAGTTTCAACAATTTCTCAAGACATTGATAAATTTAGTAT
TAATGGTCAAATTACACAAATAAAGGAATATTGCCAATTTCACGGATATGAAGTTTTTGATATTTACGCTGACCGTGGTG
TTTCAGGAAAAACAATGAATCGCCCTGAGTTACAACGCATGTTAAAAGATGCTAAAGAAGGTAAATTGGATTGTGTTATG
ATTTATAAAACAAGTCGTTTAGCGCGTAACACATCTGACTTGTTAACGATTGTTGAAGGATTACACAAGCAAAATGTTGA
ATTCTTTAGCTTGTCCGAAAACATGAAATTCGACTCAAATAGCGGAAAATTACTCTTGCAGATTTTAGCTTCCTTCTCAG
AATTCGAAAGGAATAACATCGCAGAAGGAGCGTATATGGGACAATTGAGAAGATCCCAAGAAGGCTATTATCAGGGCAAT
TTACCGTTAGCTTATGATAAAATACCTGACAGTAAACATGAACTCATGATTAATCAACATGAAGCCAATATTGTGAAGTA
TATCTTTGAATCTTACGCTAAAGGTCATGGGTATCGTAAAATTGCCAATGCACTCAATCATAAAGGTTATGTCACTAAGA
AGGGTAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAACCCATTCTATATTGGTAAAATTCAATTCGCGAAA
TACAAAGATTGGAATGATAAACGTCGTAAAGGCTTGAATGATAAACCAGTAATCGCCGAAGGCAAACACACCCCTATTAT
TAGCCAATCATTATGGGATAAAGTCCAAGCACGTAAAAAACAAGTAAGTGAAAAACCACAAGTCCATGGTAAAGGAACCA
ATATTTTAACTGGATTAATTTCGTGTCCCCAATGTTCTGCACCTATGGCTGCGAGTAACACCACAAACACACTTAAAGAT
GGCACTAAAAAACGTATTCGTTACTATTCGTGTAGTAATTTTCGAAATAAAGGCTCAAAGGTATGTTCTGCGAATAGTGT
TAGAGCCGATGTCATTGAAAAATATGTTATGGACCAAATACTTGAAATAGTCAAAAGTAATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGAAAATCAAGTCGATGTAGCTGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAGCATCTACGCTCAAACCAACCAT
TCATCAATATGAAACACAACTGAATGATATCACAAACCAAATGAATCAACTCAAGCAGCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTCTCCTATTACAACGAATATTTCAAAACATAGAATCCATGGATAAATCACAACTCAAA
GCATTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGATGGGAATCATAAAAAGCAATTCTATGTCACACTCAA
GCTCAATAATGAGATTATTAAACAACTTTTCAATAATACTCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACAATCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(302-356)

Resolvase, N terminal domain (Resolvase)

(11-155)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

80.074

100

0.801