Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RJ649_RS06945 Genome accession   NZ_CP134362
Coordinates   1415900..1416637 (-) Length   245 a.a.
NCBI ID   WP_000197692.1    Uniprot ID   -
Organism   Escherichia coli strain TUM13754     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1410900..1421637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ649_RS06915 (RJ649_06915) yfiL 1411059..1411424 (-) 366 WP_001298694.1 DUF2799 domain-containing protein -
  RJ649_RS06920 (RJ649_06920) aroF 1411634..1412704 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  RJ649_RS06925 (RJ649_06925) tyrA 1412715..1413836 (+) 1122 WP_000225234.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  RJ649_RS06930 (RJ649_06930) pheA 1413879..1415039 (-) 1161 WP_033557076.1 bifunctional chorismate mutase/prephenate dehydratase -
  RJ649_RS06935 (RJ649_06935) pheL 1415138..1415185 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  RJ649_RS06940 (RJ649_06940) raiA 1415289..1415630 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  RJ649_RS06945 (RJ649_06945) comL 1415900..1416637 (-) 738 WP_000197692.1 outer membrane protein assembly factor BamD Machinery gene
  RJ649_RS06950 (RJ649_06950) rluD 1416772..1417752 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RJ649_RS06955 (RJ649_06955) yfiH 1417749..1418480 (+) 732 WP_000040138.1 purine nucleoside phosphorylase YfiH -
  RJ649_RS06960 (RJ649_06960) clpC 1418610..1421183 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27928.53 Da        Isoelectric Point: 7.1589

>NTDB_id=802917 RJ649_RS06945 WP_000197692.1 1415900..1416637(-) (comL) [Escherichia coli strain TUM13754]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQRFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=802917 RJ649_RS06945 WP_000197692.1 1415900..1416637(-) (comL) [Escherichia coli strain TUM13754]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAAGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376