Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P3U52_RS10420 Genome accession   NZ_CP120090
Coordinates   2099788..2100183 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Dog112     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2094788..2105183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U52_RS10395 (P3U52_10395) thiE 2095250..2095891 (-) 642 WP_050963046.1 thiamine phosphate synthase -
  P3U52_RS10400 (P3U52_10400) thiM 2095893..2096684 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  P3U52_RS10405 (P3U52_10405) thiD 2096668..2097498 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  P3U52_RS10410 (P3U52_10410) tenA 2097491..2098180 (-) 690 WP_000396067.1 thiaminase II -
  P3U52_RS10415 (P3U52_10415) sceD 2098704..2099399 (-) 696 WP_072497589.1 lytic transglycosylase SceD -
  P3U52_RS10420 (P3U52_10420) ssb 2099788..2100183 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  P3U52_RS10425 (P3U52_10425) - 2100377..2100817 (+) 441 WP_000846746.1 YwpF-like family protein -
  P3U52_RS10430 (P3U52_10430) fabZ 2100876..2101316 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  P3U52_RS10435 (P3U52_10435) murA 2101350..2102615 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  P3U52_RS10440 (P3U52_10440) - 2102726..2102959 (-) 234 WP_000384523.1 DUF1146 family protein -
  P3U52_RS10445 (P3U52_10445) - 2103091..2103183 (-) 93 WP_072497593.1 hypothetical protein -
  P3U52_RS10450 (P3U52_10450) - 2103520..2103924 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=802833 P3U52_RS10420 WP_000932694.1 2099788..2100183(-) (ssb) [Staphylococcus aureus strain Dog112]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=802833 P3U52_RS10420 WP_000932694.1 2099788..2100183(-) (ssb) [Staphylococcus aureus strain Dog112]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992