Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RJ646_RS06175 Genome accession   NZ_CP134358
Coordinates   1255167..1255904 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain TUM13936     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1250167..1260904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ646_RS06150 (RJ646_06150) tyrA 1250541..1251662 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  RJ646_RS06155 (RJ646_06155) pheA 1251705..1252865 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  RJ646_RS06160 (RJ646_06160) pheL 1252964..1253011 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  RJ646_RS06165 (RJ646_06165) raiA 1253115..1253456 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  RJ646_RS06170 (RJ646_06170) - 1253717..1255045 (-) 1329 WP_024250060.1 IS4-like element IS4 family transposase -
  RJ646_RS06175 (RJ646_06175) comL 1255167..1255904 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  RJ646_RS06180 (RJ646_06180) rluD 1256039..1257019 (+) 981 WP_000079091.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RJ646_RS06185 (RJ646_06185) yfiH 1257016..1257747 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  RJ646_RS06190 (RJ646_06190) clpC 1257877..1260450 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=802833 RJ646_RS06175 WP_000197686.1 1255167..1255904(-) (comL) [Escherichia coli strain TUM13936]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=802833 RJ646_RS06175 WP_000197686.1 1255167..1255904(-) (comL) [Escherichia coli strain TUM13936]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376