Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3U41_RS14920 Genome accession   NZ_CP120086
Coordinates   2918557..2919084 (-) Length   175 a.a.
NCBI ID   WP_025906200.1    Uniprot ID   A0A1X0TQ72
Organism   Mammaliicoccus sciuri strain Dog116     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2913557..2924084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U41_RS14895 (P3U41_14895) - 2914207..2914578 (-) 372 WP_119649556.1 hypothetical protein -
  P3U41_RS15065 - 2915198..2915302 (-) 105 WP_196968567.1 sigma factor-like helix-turn-helix DNA-binding protein -
  P3U41_RS14900 (P3U41_14900) - 2915296..2915526 (-) 231 WP_119649554.1 hypothetical protein -
  P3U41_RS14905 (P3U41_14905) - 2915662..2916285 (+) 624 Protein_2903 site-specific integrase -
  P3U41_RS14910 (P3U41_14910) - 2916301..2917869 (+) 1569 WP_119649553.1 SIR2 family protein -
  P3U41_RS14915 (P3U41_14915) rpsR 2918255..2918497 (-) 243 WP_025906198.1 30S ribosomal protein S18 -
  P3U41_RS14920 (P3U41_14920) ssbA 2918557..2919084 (-) 528 WP_025906200.1 single-stranded DNA-binding protein Machinery gene
  P3U41_RS14925 (P3U41_14925) rpsF 2919112..2919405 (-) 294 WP_025906202.1 30S ribosomal protein S6 -
  P3U41_RS14930 (P3U41_14930) ychF 2919577..2920677 (-) 1101 WP_048542912.1 redox-regulated ATPase YchF -
  P3U41_RS14935 (P3U41_14935) - 2920681..2920878 (-) 198 WP_025906204.1 DUF951 domain-containing protein -
  P3U41_RS14940 (P3U41_14940) - 2920902..2921786 (-) 885 WP_049320694.1 mechanosensitive ion channel family protein -
  P3U41_RS14945 (P3U41_14945) - 2921798..2922634 (-) 837 WP_058611024.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19589.21 Da        Isoelectric Point: 4.7512

>NTDB_id=802763 P3U41_RS14920 WP_025906200.1 2918557..2919084(-) (ssbA) [Mammaliicoccus sciuri strain Dog116]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=802763 P3U41_RS14920 WP_025906200.1 2918557..2919084(-) (ssbA) [Mammaliicoccus sciuri strain Dog116]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAACCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGACAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAACCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AACGCTAATGGCCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X0TQ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.222

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

52.514

100

0.537