Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   RJ647_RS04275 Genome accession   NZ_CP134353
Coordinates   903969..904445 (-) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli strain TUM17668     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 898969..909445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ647_RS04240 (RJ647_04240) kpsS 900569..901789 (+) 1221 WP_000794251.1 capsule biosynthesis protein Regulator
  RJ647_RS04245 (RJ647_04245) - 901815..902045 (-) 231 Protein_837 hypothetical protein -
  RJ647_RS04250 (RJ647_04250) - 902151..902327 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  RJ647_RS04255 (RJ647_04255) - 902344..902774 (-) 431 Protein_839 DUF5983 family protein -
  RJ647_RS04260 (RJ647_04260) cbtA 902771..903148 (-) 378 WP_086977246.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  RJ647_RS04265 (RJ647_04265) cbeA 903237..903605 (-) 369 WP_001285590.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  RJ647_RS04270 (RJ647_04270) yeeT 903679..903900 (-) 222 WP_000692300.1 DUF987 domain-containing protein -
  RJ647_RS04275 (RJ647_04275) radC 903969..904445 (-) 477 WP_001186725.1 RadC family protein Machinery gene
  RJ647_RS04280 (RJ647_04280) - 904461..904946 (-) 486 WP_000214310.1 antirestriction protein -
  RJ647_RS04285 (RJ647_04285) - 905038..905856 (-) 819 WP_001234593.1 DUF932 domain-containing protein -
  RJ647_RS04290 (RJ647_04290) - 905974..906171 (-) 198 Protein_846 DUF905 family protein -
  RJ647_RS04295 (RJ647_04295) - 906246..906701 (-) 456 WP_000581502.1 IrmA family protein -
  RJ647_RS04300 (RJ647_04300) - 906777..909292 (-) 2516 Protein_848 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=802747 RJ647_RS04275 WP_001186725.1 903969..904445(-) (radC) [Escherichia coli strain TUM17668]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=802747 RJ647_RS04275 WP_001186725.1 903969..904445(-) (radC) [Escherichia coli strain TUM17668]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCCGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TTGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399