Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   P3U41_RS07490 Genome accession   NZ_CP120086
Coordinates   1435145..1437535 (+) Length   796 a.a.
NCBI ID   WP_311406229.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain Dog116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1430145..1442535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U41_RS07470 (P3U41_07470) sal(A) 1430452..1432077 (+) 1626 WP_196968311.1 ABC-F type ribosomal protection protein Sal(A) -
  P3U41_RS07475 (P3U41_07475) - 1432137..1433285 (+) 1149 WP_196968310.1 cysteine desulfurase family protein -
  P3U41_RS07480 (P3U41_07480) mnmA 1433278..1434387 (+) 1110 WP_049318720.1 tRNA 2-thiouridine(34) synthase MnmA -
  P3U41_RS07485 (P3U41_07485) - 1434474..1435142 (+) 669 WP_058611664.1 tetratricopeptide repeat protein -
  P3U41_RS07490 (P3U41_07490) recD2 1435145..1437535 (+) 2391 WP_311406229.1 ATP-dependent RecD-like DNA helicase Machinery gene
  P3U41_RS07495 (P3U41_07495) alaS 1437784..1440414 (+) 2631 WP_196968308.1 alanine--tRNA ligase -
  P3U41_RS07500 (P3U41_07500) - 1440482..1440751 (+) 270 WP_037588397.1 IreB family regulatory phosphoprotein -
  P3U41_RS07505 (P3U41_07505) ruvX 1440744..1441172 (+) 429 WP_025904238.1 Holliday junction resolvase RuvX -
  P3U41_RS07510 (P3U41_07510) - 1441192..1441497 (+) 306 WP_025904237.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90405.55 Da        Isoelectric Point: 4.5970

>NTDB_id=802746 P3U41_RS07490 WP_311406229.1 1435145..1437535(+) (recD2) [Mammaliicoccus sciuri strain Dog116]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVIDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVTNHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEDALQKIIDDPDVLKEIPKLNKQKRDTIAESIRENQAIEHIM
IKLNELGFGPKLAMAIYQFYKEETLNIIKQSPYRLVMDINGIGFQRADQIAEQVGISKDHHDRLVAGVSYFLDQQSLQNG
HTFLPVDILTNGAYELLNHNQPEVVNKDQINGVIIEMSEENKLIIENDNCFLPSLYYSEAKSVQIIHRLYQHQDELKEIE
KSDLQLHIGQIEDMNDVSYADGQKLALETAINHKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNGLPVSINEKHHDRSFIPCSSNQIATVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDEDTRFLQYGDIEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEEQAFNQGIQTLGHERMTSFDMKLKMYFDTDVESDTESETESIQTKHIILTEDNMFEIDPMINMNDKTPYDFMK

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=802746 P3U41_RS07490 WP_311406229.1 1435145..1437535(+) (recD2) [Mammaliicoccus sciuri strain Dog116]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTAAAAGGTGAAGTTATTAGAATTCTTTTTCAAAACAGTGATAACTA
TTATACCGTTATTAAAGTCGATGTGATAGATTCAAATGAAGATTTTGATCAAGAAGTCACAATTGTTGGTTACTTACCTC
AAATAGTTGAAGGAGAAACGTACCTTTTCAAAGGTAAAGTAACAAACCATCCGAAATACGGTAAACAACTACAAGCTGAA
ACTTTTGAAAAAGAATTACCACAAACAAAACAAGGTGTTATTCATTACTTATCGAGTGATTTATTTAAAGGTATTGGTAA
GAAAACAGCAGAAACAATCGTGGACAAACTAGGTGAAGATGCACTTCAGAAAATTATAGATGACCCAGATGTCCTTAAAG
AAATACCTAAACTTAACAAGCAAAAAAGAGATACGATTGCAGAATCAATACGTGAGAATCAAGCCATTGAACATATTATG
ATTAAACTTAATGAACTTGGTTTCGGTCCGAAACTCGCGATGGCTATTTATCAATTTTATAAAGAAGAAACACTTAATAT
TATTAAACAATCTCCATATCGTTTGGTGATGGATATAAATGGTATAGGGTTTCAAAGAGCTGACCAAATAGCCGAACAAG
TTGGAATTTCTAAAGATCATCATGATCGACTTGTAGCAGGTGTCAGTTACTTTTTAGACCAGCAATCATTACAGAATGGT
CACACATTTTTACCTGTTGATATATTGACCAATGGGGCATATGAATTGTTAAATCATAATCAACCCGAAGTTGTGAATAA
AGATCAGATTAATGGTGTCATTATAGAGATGAGTGAAGAAAATAAACTTATTATCGAAAATGATAATTGTTTTTTACCTT
CACTTTATTATTCAGAAGCGAAAAGTGTGCAAATTATTCATAGGCTTTATCAACATCAAGATGAACTTAAAGAAATTGAA
AAAAGTGATCTTCAATTACACATTGGTCAAATTGAAGATATGAATGATGTTTCATATGCAGATGGCCAAAAATTAGCGTT
AGAAACAGCCATTAATCATAAAATGATGCTTTTAACAGGTGGACCTGGAACAGGTAAGACGACAGTTATTCGAGGCATTT
GTGAGTTGTATTCTGAAATACACGGTGTGAGTTTAAATTATGATGATTACCAAGAAGGAACGGACTTTCCAATTGTATTA
GCAGCACCGACTGGACGTGCAGCCAAAAGACTAAGTGAATCTACTGGACTAGAAGCGATGACGATTCATAGATTAATTGG
ATGGAGTAAAGATACACAACCTGATGATGTGTTAGATAATGACATACATGCCCATTTAATCATTCTAGATGAAATGTCTA
TGGTAGATACATGGTTGATGTATCAATTTTTAAGAGCAGTCCCTGATTATGCTCAAATCATATTTGTAGGTGACGAAGAT
CAATTACCATCAGTTGGTCCAGGTCAGATTTTTAAAGATTTAATTGATTCTAAAGTGATACCGAGAGTGAACTTAACAGA
AGTTTATAGACAACAAGAAGGATCATCCATCATAGATTTAGCGCATAAAATAAAAAATGGATTGCCTGTTTCTATTAATG
AAAAACATCACGACCGCTCATTTATTCCTTGCAGTAGTAATCAAATTGCGACAGTTGTAGAAAAGGTCGTACAAGGTGCT
GTTAATAAAGGATATAATATGCAAGATATTCAAGTGCTAGCTCCAATATACCGTGGACCAGCAGGTATTAATAAATTAAA
TGAATTATTGCAAGATATATTAAATCCGAAAGATGAAGATACAAGATTCCTTCAATATGGAGATATTGAATATCGTGAAA
ATGATAAAGTACTTCAACTTATAAATCGTCCAGATGATAATGTATTTAATGGTGATATTGGTGTAGTAACAGGTGTTTAT
AAAGCAGAAGAAAATGCACTTGGTAAAGATGTCGTCATTGTAGATTATGAAGGGAATGACATAACATATACTAAACAAGA
TTTATCAGAAATTACACATGCTTATTGTTGTTCAATTCATAAATCACAAGGGTCGGAATTCCCGATAGTCATCATGCCTA
TTGTCAGACAATACTTTAGAATGTTACAAAAAAACATTCTATATACCGGACTTACACGTGCGAAGCAGTCGCTTGTTGTG
TGCGGTGAAGAACAAGCCTTTAATCAAGGTATCCAAACGCTAGGTCATGAGAGAATGACATCGTTTGATATGAAATTAAA
AATGTATTTCGATACTGATGTTGAATCGGATACTGAGTCTGAAACAGAATCTATTCAAACGAAACATATTATTTTAACTG
AAGATAATATGTTTGAAATCGATCCGATGATTAATATGAATGATAAAACACCATATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.627

100

0.501