Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   RJ647_RS04240 Genome accession   NZ_CP134353
Coordinates   900569..901789 (+) Length   406 a.a.
NCBI ID   WP_000794251.1    Uniprot ID   -
Organism   Escherichia coli strain TUM17668     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 895569..906789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ647_RS04225 (RJ647_04225) rfbA 895714..896592 (+) 879 WP_000166786.1 glucose-1-phosphate thymidylyltransferase RfbA -
  RJ647_RS04230 (RJ647_04230) rfbC 896658..897209 (+) 552 WP_001100778.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  RJ647_RS04235 (RJ647_04235) - 897259..899406 (+) 2148 WP_000281770.1 capsular polysaccharide biosynthesis protein -
  RJ647_RS04240 (RJ647_04240) kpsS 900569..901789 (+) 1221 WP_000794251.1 capsule biosynthesis protein Regulator
  RJ647_RS04245 (RJ647_04245) - 901815..902045 (-) 231 Protein_837 hypothetical protein -
  RJ647_RS04250 (RJ647_04250) - 902151..902327 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  RJ647_RS04255 (RJ647_04255) - 902344..902774 (-) 431 Protein_839 DUF5983 family protein -
  RJ647_RS04260 (RJ647_04260) cbtA 902771..903148 (-) 378 WP_086977246.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  RJ647_RS04265 (RJ647_04265) cbeA 903237..903605 (-) 369 WP_001285590.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  RJ647_RS04270 (RJ647_04270) yeeT 903679..903900 (-) 222 WP_000692300.1 DUF987 domain-containing protein -
  RJ647_RS04275 (RJ647_04275) radC 903969..904445 (-) 477 WP_001186725.1 RadC family protein Machinery gene
  RJ647_RS04280 (RJ647_04280) - 904461..904946 (-) 486 WP_000214310.1 antirestriction protein -
  RJ647_RS04285 (RJ647_04285) - 905038..905856 (-) 819 WP_001234593.1 DUF932 domain-containing protein -
  RJ647_RS04290 (RJ647_04290) - 905974..906171 (-) 198 Protein_846 DUF905 family protein -
  RJ647_RS04295 (RJ647_04295) - 906246..906701 (-) 456 WP_000581502.1 IrmA family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 48437.92 Da        Isoelectric Point: 10.1710

>NTDB_id=802746 RJ647_RS04240 WP_000794251.1 900569..901789(+) (kpsS) [Escherichia coli strain TUM17668]
MKNNALSILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDIHRQFD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEDGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFTRYRHHKSFSPWYEARCWGRAYWRKLFYKIMQRNVLARLVNDLDQRYYLVILQVYNDSQI
RNHSNYNDVRDYINEVVYSFSHKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTVGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLMKTQINAVYYGVKSKSNRRSA
FLNGSR

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=802746 RJ647_RS04240 WP_000794251.1 900569..901789(+) (kpsS) [Escherichia coli strain TUM17668]
ATGAAAAATAATGCTCTGAGCATTTTATTATCTGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTCTTCAA
TGATGTTGCCGAGTGGTTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAATGGAGGGGATCGTTTTTACTGCC
GTCATCGACACTATCTGGCTTATTACCAAACGCCGAAAGAATTTCCTGGTTGGTTACGAGATATCCACCGGCAATTTGAC
TTTGATACCATTCTCTGTTTTGGTGACTGCCGTCCATTGCACAAAGAAGCAAAACGTTGGGCGAAGTCTAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAATTTATTACTGTTGAAGAGGACGGTGTAAACGCGTATTCATCGC
TGCCGCGCGATCCTGACTTTTATCGTAAATTACCAGATATGCCTGCACCACATGTTGAGAACTTAAAACCCTCGACGATG
AAACGTATTGGTCATGCAATGTGGTATTACCTGATGGGATGGCATTACCGACATGAATTCACTCGCTACCGTCATCACAA
ATCATTTTCTCCTTGGTATGAGGCTCGTTGCTGGGGGCGTGCGTACTGGCGTAAGCTATTTTACAAAATAATGCAACGTA
ATGTATTGGCTCGGTTAGTGAATGATCTGGACCAACGTTACTATCTTGTTATTTTACAAGTTTATAATGATAGCCAAATT
CGTAATCACAGTAATTATAATGATGTGCGTGATTATATTAACGAAGTTGTATATTCATTTTCGCATAAGGCACCGAAAGA
GAGTTATTTGGTGATCAAACACCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATATACGTACACGATCTCCCAATGCCGGAATTATTACGCCATGCAAAAGCGGTTGTG
ACAATTAACAGTACAGTGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGTAATGCTCTGTACGACAT
CAAGGGGTTGACGTATCAAGGGCATTTGCACCAATTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGAATATTTATTGATGAAGACGCAAATTAATGCTGTTTATTATGGTGTAAAATCAAAAAGCAATAGAAGGTCCGCA
TTCCTAAACGGTAGCAGATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

95.813

0.382