Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RI578_RS17550 Genome accession   NZ_CP134203
Coordinates   3822389..3823798 (+) Length   469 a.a.
NCBI ID   WP_121748392.1    Uniprot ID   A0ABP9T6J7
Organism   Streptomyces sp. BB1-1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3817389..3828798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI578_RS17535 (RI578_17535) - 3818271..3819203 (-) 933 WP_121748395.1 Ppx/GppA phosphatase family protein -
  RI578_RS17540 (RI578_17540) - 3819275..3820087 (+) 813 WP_310871951.1 hypothetical protein -
  RI578_RS17545 (RI578_17545) - 3820095..3821921 (-) 1827 WP_310871952.1 BACON domain-containing protein -
  RI578_RS17550 (RI578_17550) radA 3822389..3823798 (+) 1410 WP_121748392.1 DNA repair protein RadA Machinery gene
  RI578_RS17555 (RI578_17555) disA 3823880..3825004 (+) 1125 WP_121748391.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  RI578_RS17560 (RI578_17560) - 3825092..3825940 (-) 849 WP_310871953.1 hypothetical protein -
  RI578_RS17565 (RI578_17565) - 3826115..3826795 (+) 681 WP_310871954.1 phosphatase PAP2 family protein -
  RI578_RS17570 (RI578_17570) - 3826809..3827480 (-) 672 WP_121748388.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49838.94 Da        Isoelectric Point: 8.0102

>NTDB_id=802671 RI578_RS17550 WP_121748392.1 3822389..3823798(+) (radA) [Streptomyces sp. BB1-1-1]
MAARAKSTKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSALPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASEQHKTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPTDPGRVPDGMKVLEVADIGDALRVLPRSRRREAPREDEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=802671 RI578_RS17550 WP_121748392.1 3822389..3823798(+) (radA) [Streptomyces sp. BB1-1-1]
ATGGCTGCCCGTGCGAAGTCCACCAAGGAACGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGACGCCGGGGC
GTGTCACCACCTCCGCGCTGCCCATCGGCCAGGTCGACGGCCGTCAGGCGACCGCCCGCTCGACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGACTGGTGCCCGGCGCCGTGGTGCTGGTCGCGGGTGAGCCCGGCGTCGGCAAGTCCACCCT
GCTGCTGGACGTGGCGGCCAAGTCGGCGAGCGAGCAGCACAAGACCCTCTATGTCACGGGTGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCCGACCGCATCAAGGCCATCGACGACCATCTGTACCTCGCCGCCGAGACCGACCTCGCGGCCGTGCTG
GGGCATCTGGACGCGGTCAAGCCCTCCCTGCTGATCCTGGACTCCGTGCAGACGGTCGCCTCCCCCGAGATCGACGGCGC
CCCCGGCGGCATGGCACAGGTGCGGGAGGTGGCGGGCGCGCTGATCCGCGCCTCCAAGGACCGCGGCATGTCCACCCTGC
TGGTGGGTCACGTCACGAAGGACGGGGCCATCGCCGGTCCGCGGCTGCTGGAGCACCTCGTGGACGTCGTGCTCCACTTC
GAGGGCGACCGGCACGCCCGCCTGCGGCTGGTCCGCGGCGTCAAGAACCGGTACGGCACCACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTGACCGACCCCAGCGGACTCTTCCTCACCCGCCGCGCGGAACCCGTGCCCG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTGCAGGCGCTCACGGTCGACTCCCAGATC
CCGTCCCCCCGGCGCACCACCTCCGGTCTGGAGACCTCCCGCGTGTCCATGATGCTGGCCGTCCTGGAGCAGCGCGGCCG
CATCAGCGCCCTGGGCAAAAGGGACATCTACTCCGCGACGGTCGGCGGTGTGAAGCTTTCCGAGCCGGCCGCCGACCTGG
CCGTCGCGCTCGCCCTCGCCTCGGCCGCCAGCGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAGGTCGGCCTC
GCCGGTGAGGTGAGACGGGTCACCGGCGTGCAGCGCAGGCTCTCCGAGGCGCACCGCCTGGGCTTCACGCACGCCCTGGT
GCCGACCGACCCCGGCAGGGTCCCCGACGGTATGAAGGTCCTGGAAGTCGCGGACATAGGGGACGCCCTGCGGGTGCTTC
CGCGCTCGCGTCGGCGAGAGGCCCCACGGGAGGACGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414
  radA Streptococcus mitis NCTC 12261

42.92

96.375

0.414
  radA Streptococcus pneumoniae R6

42.984

95.736

0.412
  radA Streptococcus pneumoniae Rx1

42.984

95.736

0.412
  radA Streptococcus pneumoniae TIGR4

42.984

95.736

0.412
  radA Streptococcus pneumoniae D39

42.984

95.736

0.412
  radA Streptococcus mitis SK321

44.235

90.618

0.401