Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RI578_RS01725 Genome accession   NZ_CP134203
Coordinates   393019..393693 (-) Length   224 a.a.
NCBI ID   WP_310869337.1    Uniprot ID   -
Organism   Streptomyces sp. BB1-1-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 388019..398693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI578_RS01715 (RI578_01715) - 389442..391958 (-) 2517 WP_310869335.1 FtsX-like permease family protein -
  RI578_RS01720 (RI578_01720) - 391955..392773 (-) 819 WP_310869336.1 ABC transporter ATP-binding protein -
  RI578_RS01725 (RI578_01725) vraR 393019..393693 (-) 675 WP_310869337.1 response regulator transcription factor Regulator
  RI578_RS01730 (RI578_01730) - 393690..394928 (-) 1239 WP_310869338.1 histidine kinase -
  RI578_RS01735 (RI578_01735) - 394998..396065 (-) 1068 WP_310869339.1 acyl-CoA desaturase -
  RI578_RS01740 (RI578_01740) - 396215..397426 (-) 1212 WP_310869340.1 acyltransferase -
  RI578_RS01745 (RI578_01745) - 397426..398400 (-) 975 WP_310869341.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24167.86 Da        Isoelectric Point: 6.2657

>NTDB_id=802637 RI578_RS01725 WP_310869337.1 393019..393693(-) (vraR) [Streptomyces sp. BB1-1-1]
MTTRVIVVDDQAMVRAGFAALLAAQSDIDVVGEAPDGAQGVELSRRTHPDVVLMDVRMPEMDGLEAARRLLTPPPGVTHR
PRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTRRLIADFARQRPAARGKPALRLKAL
TERETEVLTLVARGRSNTEIAQDLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLVAPGE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=802637 RI578_RS01725 WP_310869337.1 393019..393693(-) (vraR) [Streptomyces sp. BB1-1-1]
GTGACAACGCGCGTCATCGTCGTCGACGACCAGGCCATGGTGCGGGCCGGTTTCGCCGCGCTGCTGGCCGCCCAGAGCGA
CATCGACGTGGTGGGCGAGGCACCCGACGGTGCGCAGGGCGTCGAGCTGAGCCGGCGCACCCACCCCGACGTCGTGCTGA
TGGACGTCCGCATGCCCGAGATGGACGGCCTCGAGGCCGCGCGCCGCCTCCTCACGCCCCCGCCCGGCGTCACCCACCGG
CCGCGCGTCCTGATGCTCACCACGTTCGACGTCGACGACTACGTCTACGAGGCGCTGCGGGCGGGCGCGAGCGGCTTCCT
GCTGAAGGACGCGCCGCCGGCCGACCTCATCGCGGCGGTACGCGTCGTGGCCTCGGGCGACGCGCTGCTCGCCCCCTCCG
TGACGCGCCGCCTCATCGCGGACTTCGCCCGGCAACGTCCCGCCGCCCGGGGCAAGCCCGCGCTGCGGCTCAAGGCCCTG
ACAGAACGCGAGACCGAGGTCCTCACGCTGGTGGCCCGCGGCCGGTCCAACACGGAGATCGCGCAGGATCTGGTGCTGGC
CGAGCAGACCGTGAAGACGCACGTGAGCCGCGTCCTCACCAAGCTCGACCTGCGCGACCGCGCCCAGGCGGTGGTCTTCG
CGTACGAATCGGGGCTGGTGGCCCCGGGCGAGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-214)

Response regulator receiver domain (Response_reg)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.455

98.214

0.397
  degU Bacillus subtilis subsp. subtilis str. 168

38.496

100

0.388