Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P3U18_RS08030 Genome accession   NZ_CP120078
Coordinates   1680203..1681090 (-) Length   295 a.a.
NCBI ID   WP_063284339.1    Uniprot ID   A0A3D8YNB6
Organism   Staphylococcus pseudintermedius strain Dog120     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1675203..1686090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U18_RS08015 (P3U18_08015) xerC 1675707..1676618 (-) 912 WP_015729043.1 tyrosine recombinase XerC -
  P3U18_RS08020 (P3U18_08020) trmFO 1676718..1678022 (-) 1305 WP_015729042.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P3U18_RS08025 (P3U18_08025) topA 1678050..1680119 (-) 2070 WP_014614088.1 type I DNA topoisomerase -
  P3U18_RS08030 (P3U18_08030) dprA 1680203..1681090 (-) 888 WP_063284339.1 DNA-processing protein DprA Machinery gene
  P3U18_RS08035 (P3U18_08035) sucD 1681329..1682234 (-) 906 WP_063284338.1 succinate--CoA ligase subunit alpha -
  P3U18_RS08040 (P3U18_08040) sucC 1682256..1683422 (-) 1167 WP_063278813.1 ADP-forming succinate--CoA ligase subunit beta -
  P3U18_RS08045 (P3U18_08045) - 1683684..1683959 (-) 276 WP_015729039.1 hypothetical protein -
  P3U18_RS08050 (P3U18_08050) - 1684051..1684836 (-) 786 WP_187525806.1 ribonuclease HII -
  P3U18_RS08055 (P3U18_08055) ylqF 1684829..1685701 (-) 873 WP_015729037.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33529.00 Da        Isoelectric Point: 8.4807

>NTDB_id=802614 P3U18_RS08030 WP_063284339.1 1680203..1681090(-) (dprA) [Staphylococcus pseudintermedius strain Dog120]
MKQLLLLLLYAGFSTQQIQSCYPKLCALTGNLPQRIQAFKSMFSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSTNSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTLSEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=802614 P3U18_RS08030 WP_063284339.1 1680203..1681090(-) (dprA) [Staphylococcus pseudintermedius strain Dog120]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATCCAATCCTGTTACCCTAAACTTTGTGC
TTTAACAGGAAATCTACCTCAGCGCATTCAAGCCTTCAAATCAATGTTTTCGCACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTACTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGGTTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTCTAAGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTCAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3D8YNB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.69

98.305

0.498
  dprA Staphylococcus aureus N315

50.345

98.305

0.495