Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P3U38_RS07295 Genome accession   NZ_CP120077
Coordinates   1563781..1564668 (-) Length   295 a.a.
NCBI ID   WP_130921702.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain Dog121     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1558781..1569668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U38_RS07280 (P3U38_07285) xerC 1559285..1560196 (-) 912 WP_015729043.1 tyrosine recombinase XerC -
  P3U38_RS07285 (P3U38_07290) trmFO 1560296..1561600 (-) 1305 WP_015729042.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P3U38_RS07290 (P3U38_07295) topA 1561628..1563697 (-) 2070 WP_014614088.1 type I DNA topoisomerase -
  P3U38_RS07295 (P3U38_07300) dprA 1563781..1564668 (-) 888 WP_130921702.1 DNA-processing protein DprA Machinery gene
  P3U38_RS07300 (P3U38_07305) sucD 1564903..1565808 (-) 906 WP_014614090.1 succinate--CoA ligase subunit alpha -
  P3U38_RS07305 (P3U38_07310) sucC 1565830..1566996 (-) 1167 WP_015729040.1 ADP-forming succinate--CoA ligase subunit beta -
  P3U38_RS07310 (P3U38_07315) - 1567263..1567538 (-) 276 WP_015729039.1 hypothetical protein -
  P3U38_RS07315 (P3U38_07320) - 1567630..1568415 (-) 786 WP_100007381.1 ribonuclease HII -
  P3U38_RS07320 (P3U38_07325) ylqF 1568408..1569280 (-) 873 WP_323704976.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33601.05 Da        Isoelectric Point: 8.6269

>NTDB_id=802581 P3U38_RS07295 WP_130921702.1 1563781..1564668(-) (dprA) [Staphylococcus pseudintermedius strain Dog121]
MKQLLLLLLYAGFSTQQIQSYYPKLCTLTGNLPQRIQSFKSMLSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSTNSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTISEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=802581 P3U38_RS07295 WP_130921702.1 1563781..1564668(-) (dprA) [Staphylococcus pseudintermedius strain Dog121]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATCCAATCCTATTACCCTAAACTTTGTAC
TTTAACAGGAAATCTACCTCAGCGCATTCAATCCTTCAAATCAATGCTTTCGCACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTACTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGGCTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTATAAGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTTAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

51.034

98.305

0.502
  dprA Staphylococcus aureus N315

50.69

98.305

0.498