Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   P3U29_RS04735 Genome accession   NZ_CP120073
Coordinates   974710..975339 (+) Length   209 a.a.
NCBI ID   WP_069794961.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain Dog122     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 969710..980339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U29_RS04710 (P3U29_04710) - 970559..971545 (-) 987 WP_002482841.1 FUSC family protein -
  P3U29_RS04715 (P3U29_04715) map 971720..972472 (+) 753 WP_011302778.1 type I methionyl aminopeptidase -
  P3U29_RS04720 (P3U29_04720) - 972576..972962 (+) 387 WP_323709791.1 hypothetical protein -
  P3U29_RS04725 (P3U29_04725) liaF 972979..973680 (+) 702 WP_011302780.1 cell wall-active antibiotics response protein LiaF -
  P3U29_RS04730 (P3U29_04730) vraS 973677..974720 (+) 1044 WP_069794962.1 sensor histidine kinase Regulator
  P3U29_RS04735 (P3U29_04735) vraR 974710..975339 (+) 630 WP_069794961.1 response regulator transcription factor Regulator
  P3U29_RS04740 (P3U29_04740) - 975496..976668 (-) 1173 WP_069794960.1 YihY/virulence factor BrkB family protein -
  P3U29_RS04745 (P3U29_04745) - 977080..977364 (-) 285 WP_002482848.1 hypothetical protein -
  P3U29_RS04750 (P3U29_04750) - 977371..977835 (-) 465 WP_011302783.1 low molecular weight protein-tyrosine-phosphatase -
  P3U29_RS04755 (P3U29_04755) - 977970..978173 (+) 204 WP_002482850.1 DUF1128 family protein -
  P3U29_RS04760 (P3U29_04760) - 978187..979425 (+) 1239 WP_069794958.1 aminopeptidase -
  P3U29_RS04765 (P3U29_04765) - 979639..980160 (+) 522 WP_011302785.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23670.16 Da        Isoelectric Point: 4.6997

>NTDB_id=802534 P3U29_RS04735 WP_069794961.1 974710..975339(+) (vraR) [Staphylococcus saprophyticus strain Dog122]
MPVKVLFVDDHEMVRIGISSYLSTQSDIDVVGEGKSGKDAIEKAHELKPDLILMDLLMDDMDGVEATEQVKKDLPNIKVV
MLTSYIEDNEVYRALDSGVDSYILKTTSASDIAEAIRKTYNNESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=802534 P3U29_RS04735 WP_069794961.1 974710..975339(+) (vraR) [Staphylococcus saprophyticus strain Dog122]
ATGCCGGTTAAAGTATTATTTGTTGATGATCATGAAATGGTTCGAATAGGTATTTCTAGTTATTTATCCACACAATCAGA
TATAGATGTCGTAGGGGAAGGTAAGTCAGGAAAAGATGCAATCGAAAAAGCACATGAACTGAAACCGGACCTAATTTTAA
TGGATTTACTTATGGACGATATGGATGGTGTCGAAGCAACTGAACAAGTTAAAAAAGACTTGCCAAATATTAAAGTTGTC
ATGCTTACGAGTTATATTGAAGATAACGAAGTCTATCGTGCACTTGATTCCGGTGTAGATAGCTATATATTGAAAACAAC
AAGTGCTAGTGATATTGCTGAAGCGATTCGTAAGACTTACAATAATGAGTCAGTATTTGAAGCAGAAGTCCTAGTTAAAA
TGAGAAATAGGATGAAACAACGAGCTGAATTGTATGAAATGCTCACAGAACGTGAAATGGAGATTTTATTACTGATTGCT
AAAGGTTACTCTAACCAAGAGATTGCCAGCGCTTCACATATTACGATTAAAACAGTGAAAACGCATGTAAGTAATATCCT
AAGTAAATTAGAAGTTCAAGATAGAACTCAAGCCGTCATATATGCATTCCAGCACAATTTAATTCAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

89.474

100

0.895
  degU Bacillus subtilis subsp. subtilis str. 168

33.929

100

0.364