Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RIU97_RS40475 Genome accession   NZ_CP134201
Coordinates   8704345..8705046 (-) Length   233 a.a.
NCBI ID   WP_404962495.1    Uniprot ID   -
Organism   Streptomyces sp. 147326     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8699345..8710046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU97_RS40450 (RIU97_40330) - 8699626..8700402 (-) 777 WP_404962490.1 type 1 glutamine amidotransferase domain-containing protein -
  RIU97_RS40455 (RIU97_40335) - 8700665..8701672 (+) 1008 WP_404962491.1 AraC family transcriptional regulator -
  RIU97_RS40460 (RIU97_40340) - 8701863..8702315 (+) 453 WP_404962492.1 Ohr family peroxiredoxin -
  RIU97_RS40465 (RIU97_40345) - 8702302..8702733 (+) 432 WP_404962493.1 hypothetical protein -
  RIU97_RS40470 (RIU97_40350) - 8702858..8704072 (-) 1215 WP_404962494.1 alpha/beta hydrolase -
  RIU97_RS40475 (RIU97_40355) vraR 8704345..8705046 (-) 702 WP_404962495.1 response regulator Regulator
  RIU97_RS40480 (RIU97_40360) - 8705043..8706287 (-) 1245 WP_404962496.1 sensor histidine kinase -
  RIU97_RS40485 (RIU97_40365) - 8706959..8707783 (+) 825 WP_404962497.1 hypothetical protein -
  RIU97_RS40490 (RIU97_40370) - 8709510..8709953 (+) 444 WP_404962498.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 24885.56 Da        Isoelectric Point: 4.5581

>NTDB_id=802528 RIU97_RS40475 WP_404962495.1 8704345..8705046(-) (vraR) [Streptomyces sp. 147326]
MTIRVLIADDQAMVREAFSVLLGAQPDIEVVATAEDGTQAVARSEELAPDVIVMDIRMPGLDGIEATRQITSAPGTATKI
LILTTFDLDEYVYEALRAGASGFLLKDASGIQLAEAVRVVARGEALLAPDITMRLVAEFSRVSPGARPPTGVRIDALTDR
ETEVLAQVAQGLSNAEIAQVLVVAEETVKTHVGRILRKLQLRDRTQAAVFAYETGLVAPGNAARWTPSLRTAP

Nucleotide


Download         Length: 702 bp        

>NTDB_id=802528 RIU97_RS40475 WP_404962495.1 8704345..8705046(-) (vraR) [Streptomyces sp. 147326]
ATGACCATCCGTGTGCTCATCGCCGACGACCAGGCCATGGTCCGGGAAGCCTTCTCCGTACTGCTCGGCGCCCAGCCCGA
CATCGAGGTCGTTGCCACCGCCGAGGACGGCACTCAGGCCGTCGCCAGGTCCGAGGAACTGGCACCCGACGTGATCGTGA
TGGACATCCGGATGCCCGGTCTCGACGGCATCGAGGCCACCCGTCAGATCACGTCCGCCCCCGGAACGGCAACGAAGATC
CTCATCCTGACCACCTTCGACCTCGACGAGTACGTCTACGAGGCCTTGCGCGCCGGGGCCTCCGGTTTCCTACTCAAGGA
CGCCTCTGGCATCCAGCTCGCGGAGGCCGTAAGGGTGGTGGCTCGGGGTGAGGCTCTGCTCGCACCCGACATCACCATGC
GACTCGTCGCAGAATTCTCCCGCGTGAGTCCCGGCGCCAGGCCGCCGACCGGGGTGCGCATCGACGCCCTCACCGACCGC
GAGACCGAAGTTCTCGCACAGGTGGCACAGGGCCTCTCCAATGCGGAGATCGCCCAAGTGCTGGTCGTCGCCGAGGAGAC
GGTCAAGACCCACGTGGGCCGCATCCTGCGAAAGCTGCAGCTGCGCGACCGCACCCAGGCCGCCGTCTTCGCCTACGAAA
CCGGACTGGTCGCCCCCGGGAACGCTGCCCGCTGGACACCCTCGCTGCGAACCGCCCCGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(156-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.119

93.562

0.403
  degU Bacillus subtilis subsp. subtilis str. 168

40.789

97.854

0.399