Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RIU97_RS30775 Genome accession   NZ_CP134201
Coordinates   6702111..6702773 (+) Length   220 a.a.
NCBI ID   WP_404960841.1    Uniprot ID   -
Organism   Streptomyces sp. 147326     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6697111..6707773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU97_RS30755 (RIU97_30675) - 6697953..6698609 (-) 657 WP_404960837.1 transglycosylase SLT domain-containing protein -
  RIU97_RS30760 (RIU97_30680) - 6698894..6700015 (-) 1122 WP_404960838.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  RIU97_RS30765 (RIU97_30685) - 6700012..6700785 (-) 774 WP_404960839.1 SDR family NAD(P)-dependent oxidoreductase -
  RIU97_RS30770 (RIU97_30690) - 6700958..6702118 (+) 1161 WP_404960840.1 GAF domain-containing sensor histidine kinase -
  RIU97_RS30775 (RIU97_30695) vraR 6702111..6702773 (+) 663 WP_404960841.1 response regulator Regulator
  RIU97_RS30780 (RIU97_30700) - 6702923..6703168 (+) 246 WP_404963007.1 chaplin -
  RIU97_RS30785 (RIU97_30705) - 6703414..6704187 (-) 774 WP_404960842.1 hypothetical protein -
  RIU97_RS30790 (RIU97_30710) - 6704321..6705124 (+) 804 WP_404960843.1 ABC transporter ATP-binding protein -
  RIU97_RS30795 (RIU97_30715) - 6705176..6705604 (+) 429 WP_404960844.1 NfeD family protein -
  RIU97_RS30800 (RIU97_30720) - 6705689..6706675 (+) 987 WP_361757366.1 SPFH domain-containing protein -
  RIU97_RS30805 (RIU97_30725) - 6706765..6707535 (+) 771 WP_404960845.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23892.22 Da        Isoelectric Point: 5.4016

>NTDB_id=802516 RIU97_RS30775 WP_404960841.1 6702111..6702773(+) (vraR) [Streptomyces sp. 147326]
MAESPGRGGSRVRVLLVDDHQVVRRGLRTFLEVQEDIEVVGEASDGEEGIARAEELRPDVILMDIKMPGTDGIEALRRLR
ELANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAVALLSQDDQSPSAGRPGALT
EREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGFAE

Nucleotide


Download         Length: 663 bp        

>NTDB_id=802516 RIU97_RS30775 WP_404960841.1 6702111..6702773(+) (vraR) [Streptomyces sp. 147326]
GTGGCTGAGAGCCCCGGCCGCGGCGGCAGCCGCGTTCGCGTACTGCTGGTCGACGACCACCAGGTGGTCCGGCGCGGCCT
GCGCACCTTCCTGGAGGTCCAGGAGGACATCGAGGTCGTCGGCGAGGCCTCCGACGGCGAGGAGGGCATCGCCCGCGCCG
AGGAACTGCGGCCCGACGTGATCCTCATGGACATCAAGATGCCGGGCACCGACGGGATCGAGGCGCTGCGCAGGCTGCGC
GAGCTGGCGAACCCGGCGCGGGTGCTGATCGTCACCAGCTTCACCGAGCAGCGGACCGTGGTCCCCGCCCTGCGGGCCGG
CGCCGCGGGATACGTCTACAAGGACATCGACCCCGACGCCCTGGCCGGAGCCATCCGCTCCGTCCACGCGGGCCACGTGC
TGCTCCAGCCGGAGGTGGCGGTGGCCCTGCTCTCCCAGGACGACCAGAGCCCCTCGGCGGGCCGGCCCGGCGCGCTGACC
GAGCGCGAGCGCGAGGTGCTCGGCCTGATCGCGGACGGCCGCTCCAACCGCGAGATCGCCCGCGCGCTGGTGCTGTCCGA
GAAGACGGTCAAGACCCACGTCTCGAACATCCTGATGAAGTTGGACCTTTCCGACCGGACTCAGGCCGCATTGTGGGCGG
TCAGGCACGGATTCGCCGAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-213)

Response regulator receiver domain (Response_reg)

(14-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.455

95

0.432
  degU Bacillus subtilis subsp. subtilis str. 168

39.823

100

0.409