Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   RIU97_RS17765 Genome accession   NZ_CP134201
Coordinates   3982338..3983750 (+) Length   470 a.a.
NCBI ID   WP_383566573.1    Uniprot ID   -
Organism   Streptomyces sp. 147326     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3977338..3988750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU97_RS17750 (RIU97_17715) - 3978427..3979362 (-) 936 WP_404957888.1 Ppx/GppA family phosphatase -
  RIU97_RS17755 (RIU97_17720) - 3979426..3980292 (+) 867 WP_404957890.1 hypothetical protein -
  RIU97_RS17760 (RIU97_17725) - 3980366..3982156 (-) 1791 WP_404957892.1 BACON domain-containing protein -
  RIU97_RS17765 (RIU97_17730) radA/sms 3982338..3983750 (+) 1413 WP_383566573.1 DNA repair protein RadA Machinery gene
  RIU97_RS17770 (RIU97_17735) disA 3983924..3985048 (+) 1125 WP_030720549.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  RIU97_RS17775 (RIU97_17740) - 3985143..3985946 (-) 804 WP_404957895.1 hypothetical protein -
  RIU97_RS17780 (RIU97_17745) - 3986107..3986334 (+) 228 WP_404957897.1 hypothetical protein -
  RIU97_RS17785 (RIU97_17750) - 3986337..3986552 (+) 216 WP_404957900.1 phosphatase PAP2 family protein -
  RIU97_RS17790 (RIU97_17755) - 3986576..3987493 (+) 918 WP_404957902.1 A/G-specific adenine glycosylase -
  RIU97_RS17795 (RIU97_17760) - 3987824..3988384 (+) 561 WP_319727094.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49278.45 Da        Isoelectric Point: 8.0046

>NTDB_id=802480 RIU97_RS17765 WP_383566573.1 3982338..3983750(+) (radA/sms) [Streptomyces sp. 147326]
MAARTARSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEMGAPAVRTTAAGRVSTAAVPIAQVDGRTATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRINALSDHLYLAAETDLSA
VLGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGIKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVIEVADMGDALRVLPRGRSRTPARERASD

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=802480 RIU97_RS17765 WP_383566573.1 3982338..3983750(+) (radA/sms) [Streptomyces sp. 147326]
ATGGCTGCCCGCACTGCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGTACCGAGTGCGGCTGGACGACCGCGAA
ATGGCTCGGCCGGTGCCCCGAGTGCCAGGCCTGGGGCACCGTCGAGGAAATGGGCGCGCCCGCCGTGCGGACCACCGCCG
CCGGCCGGGTGTCGACCGCCGCGGTGCCGATCGCGCAGGTCGACGGGCGGACCGCGACCGCGCGCAGCACCGGTGTGGAC
GAGCTGGACCGCGTCCTCGGCGGCGGGCTCGTCCCCGGCGCCGTCGTCCTGCTCGCCGGCGAGCCCGGCGTCGGGAAGTC
GACGCTGCTGCTGGACGTGGCGGCGAAGGCGGCCAGCGACGAGCACCGCACCCTCTACGTCACGGGCGAGGAGTCGGCGA
GCCAGGTGCGGCTGCGGGCCGACCGGATCAACGCCCTCAGCGACCACCTCTACCTCGCCGCCGAGACCGATCTCTCCGCC
GTGCTCGGGCACCTCGACGCCGTGAAGCCCTCCCTCCTGATCCTGGACTCCGTCCAGACCGTCGCCTCCCCCGAGATCGA
CGGCGCGCCCGGCGGCATGGCCCAGGTGCGGGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCCA
CCCTCCTCGTCGGCCACGTGACCAAGGACGGGGCGATCGCCGGACCCCGGCTGCTGGAGCACCTCGTGGACGTGGTGCTG
AGCTTCGAGGGCGACCGGCACGCGCGCCTGCGGCTGGTGCGCGGCATCAAGAACCGGTACGGGGCCACCGACGAGGTCGG
CTGCTTCGAGCTGCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGGCGCGCCGAGGCCG
TTCCCGGGACCTGTCTGACGGTCACCCTGGAGGGCAAGCGTCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGACTCG
CAGATCCCCTCCCCCCGGCGCACGACCTCGGGCCTGGAGACCTCGCGCGTGTCGATGATGCTGGCGGTGCTGGAGCAGCG
CGGCCGGATCACGGCGCTGGGCAAGCGCGACATCTACAGCGCGACCGTGGGCGGGGTGAAGCTGACCGAGCCTGCCGCCG
ACCTGGCGATCGCGCTCGCCCTGGCCTCCGCCGCCAGTGACGTCCCGCTGCCGAAGAACCTCGTGGCGATCGGCGAGGTC
GGCCTGGCCGGCGAGGTCCGGCGGGTGACCGGCGTGCAGCGGCGCCTCGCCGAGGCGCACCGGCTCGGCTTCACGCACGC
ACTGGTCCCGGCGGATCCGGGGAAGGTCCCGGCCGGGATGAAGGTGATCGAAGTGGCCGACATGGGCGACGCGCTCCGGG
TGCTGCCGCGCGGTCGCTCCCGTACGCCGGCCAGGGAGCGGGCCTCGGACTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

96.383

0.426
  radA Streptococcus mitis SK321

42.857

96.809

0.415
  radA Streptococcus mitis NCTC 12261

42.857

96.809

0.415
  radA Streptococcus pneumoniae TIGR4

42.92

96.17

0.413
  radA Streptococcus pneumoniae R6

42.92

96.17

0.413
  radA Streptococcus pneumoniae Rx1

42.92

96.17

0.413
  radA Streptococcus pneumoniae D39

42.92

96.17

0.413