Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   RIU97_RS12165 Genome accession   NZ_CP134201
Coordinates   2812743..2814938 (-) Length   731 a.a.
NCBI ID   WP_404956091.1    Uniprot ID   -
Organism   Streptomyces sp. 147326     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2807743..2819938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU97_RS12135 (RIU97_12100) rnc 2808651..2809496 (-) 846 WP_327416644.1 ribonuclease III -
  RIU97_RS12140 (RIU97_12105) rpmF 2809516..2809689 (-) 174 WP_003965982.1 50S ribosomal protein L32 -
  RIU97_RS12145 (RIU97_12110) - 2809692..2810342 (-) 651 WP_393850813.1 YceD family protein -
  RIU97_RS12150 (RIU97_12115) - 2810472..2811491 (-) 1020 WP_404956087.1 DivIVA domain-containing protein -
  RIU97_RS12155 (RIU97_12120) coaD 2811595..2812074 (-) 480 WP_404962820.1 pantetheine-phosphate adenylyltransferase -
  RIU97_RS12160 (RIU97_12125) rsmD 2812089..2812667 (-) 579 WP_404956089.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RIU97_RS12165 (RIU97_12130) recG 2812743..2814938 (-) 2196 WP_404956091.1 ATP-dependent DNA helicase RecG Machinery gene
  RIU97_RS12170 (RIU97_12135) - 2814965..2816665 (-) 1701 WP_404956093.1 DAK2 domain-containing protein -
  RIU97_RS12175 (RIU97_12140) rpmB 2816906..2817091 (+) 186 WP_007266795.1 50S ribosomal protein L28 -
  RIU97_RS12180 (RIU97_12145) thiD 2817180..2817980 (-) 801 WP_404956096.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RIU97_RS12185 (RIU97_12150) - 2817977..2818960 (-) 984 WP_404956098.1 thiamine-phosphate kinase -
  RIU97_RS12190 (RIU97_12155) - 2819206..2819439 (+) 234 WP_030011290.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 731 a.a.        Molecular weight: 79018.64 Da        Isoelectric Point: 6.2176

>NTDB_id=802467 RIU97_RS12165 WP_404956091.1 2812743..2814938(-) (recG) [Streptomyces sp. 147326]
MEHVPALDEDLKKTLGPATAKVLAEQLGLHTALDLLHHYPRRYAERGELTSLAELADQIDEHVTVVAQVADARILTFNGG
RGKRLEVTITDGSGRLQLVFFGAGVHKPHKELLPGSRAMFAGKVSKFNHKLQLAHPAYEPLGADASDRDAATAFANQLIP
IYPACAKLESWKIAKCVDAVLPSAREAVDPLPPALREGRGLVPLTEALLKIHRPATKADIDDARQRLKWDEAFVLQVALA
RRRHADSQLPAVPRRPAPGGLLDSFDAKLPFTLTDGQVAVSKEIFDDLATSHPMHRLLQGEVGSGKTMVALRAMLAVVDS
GGQAAMLAPTEVLAQQHHRSIVEMMGELAEGGMLGGSDQGTKVVLLTGSMGMPARRQALLDLVTGEAGIVIGTHALIEDK
VQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAKDK
PHFLARAWERVREEVENGHQAYVVCPRIGDGEDEPKKKKAAEEDGDKRPPLAVLEIAEQLTRGPLAGLSVEVLHGRMDPA
DKDDVMRRFAAGEVKVLVATTVIEVGVNVPNSTVMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEMHEASPARARL
AAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLAVIEDEEVIAQAREEATRVVAEDPALEGLPGLRTALDALL
DTEREQYLEKG

Nucleotide


Download         Length: 2196 bp        

>NTDB_id=802467 RIU97_RS12165 WP_404956091.1 2812743..2814938(-) (recG) [Streptomyces sp. 147326]
ATGGAACACGTGCCCGCGCTCGACGAAGACCTCAAGAAGACGCTCGGACCCGCCACCGCCAAGGTGCTGGCCGAGCAGCT
CGGCCTGCACACGGCCCTGGACCTGCTCCACCACTACCCGCGGCGGTACGCCGAGCGCGGTGAGCTGACCTCGCTGGCCG
AGCTCGCCGACCAGATCGACGAGCACGTGACCGTCGTCGCGCAGGTCGCCGACGCCCGGATCCTGACCTTCAACGGGGGC
CGGGGCAAGCGCCTGGAGGTGACCATCACCGACGGCAGCGGCCGGCTCCAGCTGGTCTTCTTCGGAGCCGGCGTCCACAA
GCCGCACAAGGAGCTGCTGCCCGGCAGCCGCGCGATGTTCGCCGGCAAGGTCTCCAAGTTCAACCACAAGCTCCAGCTCG
CCCACCCCGCGTACGAGCCGCTCGGCGCGGACGCCTCCGACCGGGACGCCGCCACCGCCTTCGCCAACCAGCTCATCCCG
ATCTACCCGGCCTGCGCGAAGCTGGAGTCCTGGAAGATCGCCAAGTGCGTGGACGCGGTGCTGCCCAGCGCCCGGGAGGC
CGTGGACCCGCTGCCGCCCGCCCTGCGCGAGGGCCGCGGTCTGGTCCCGCTCACCGAGGCCCTGCTGAAGATCCACCGGC
CGGCCACCAAGGCCGACATCGACGACGCCCGCCAGCGCCTCAAGTGGGACGAGGCCTTCGTCCTCCAGGTCGCCCTGGCC
CGCCGCCGCCACGCCGACTCCCAGCTCCCGGCCGTCCCCCGCCGCCCGGCCCCCGGCGGCCTCCTCGACTCCTTCGACGC
GAAGCTCCCCTTCACCCTCACCGACGGCCAGGTGGCCGTCTCGAAGGAGATCTTCGACGACCTGGCCACCAGCCACCCCA
TGCACCGCCTCCTCCAGGGCGAGGTCGGAAGCGGGAAGACGATGGTGGCCCTGCGGGCGATGCTCGCCGTCGTGGATTCC
GGCGGGCAGGCTGCCATGCTCGCGCCCACCGAGGTGCTCGCGCAGCAGCACCACCGGTCCATCGTCGAGATGATGGGCGA
ACTGGCCGAGGGAGGCATGCTCGGCGGCTCCGACCAGGGGACCAAGGTGGTGCTCCTCACCGGGTCGATGGGGATGCCCG
CGCGCCGGCAGGCCCTGCTCGACCTGGTCACCGGCGAGGCCGGGATCGTGATCGGCACGCACGCGCTGATCGAGGACAAG
GTGCAGTTCCACGACCTCGGGCTGGTGGTCGTGGACGAACAGCACCGCTTCGGCGTCGAGCAGCGCGACGCCCTCAGGTC
CAAGGGGAAGCAGCCCCCGCACCTGCTGGTGATGACCGCCACCCCGATCCCGCGCACGGTCGCCATGACCGTCTTCGGCG
ACCTCGAGACCTCCGTCCTCGACCAGCTGCCCGCCGGGCGCTCGCCGATCGCCACCCACGTGGTGCCCGCCAAGGACAAG
CCGCACTTCCTCGCCCGGGCCTGGGAACGGGTCCGCGAGGAAGTGGAGAACGGCCACCAGGCGTACGTGGTGTGCCCGCG
CATCGGTGACGGCGAGGACGAGCCCAAGAAGAAGAAGGCGGCCGAGGAGGACGGGGACAAGCGGCCCCCGCTGGCGGTGC
TGGAGATCGCCGAGCAGCTGACGCGCGGCCCGCTCGCCGGGCTGTCCGTGGAGGTGCTCCACGGCCGGATGGACCCGGCC
GACAAGGACGACGTCATGCGGCGCTTCGCCGCGGGCGAGGTCAAGGTGCTCGTCGCCACCACCGTCATCGAGGTCGGTGT
GAACGTCCCGAACTCCACCGTCATGGTGATCATGGACGCGGACCGGTTCGGCGTCTCCCAGCTCCACCAGCTGCGCGGCC
GCGTCGGCCGCGGCTCCGCCCCCGGCCTGTGCCTGCTGGTCAGCGAGATGCACGAGGCCAGCCCCGCCCGGGCCCGGCTG
GCCGCCGTCGCCGCCACCCTCGACGGCTTCGAGCTCTCCCGGATCGACCTCGAGCAGCGCCGCGAGGGCGACGTACTGGG
CCAGGCCCAGTCGGGCGTGCGCTCCTCGCTGCGCATGCTCGCCGTCATCGAGGACGAGGAGGTCATCGCCCAGGCCCGGG
AGGAGGCCACCCGCGTCGTCGCCGAGGACCCCGCCCTGGAGGGCCTGCCGGGCCTGCGGACCGCGCTGGACGCCCTGCTC
GACACCGAGCGCGAGCAGTACCTGGAGAAGGGCTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(646-706)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(63-141)

DEAD/DEAH box helicase (DEAD)

(296-447)

Helicase conserved C-terminal domain (Helicase_C)

(496-618)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.993

95.075

0.371
  recG Bacillus subtilis subsp. subtilis str. 168

37.447

97.538

0.365