Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RIU97_RS01775 Genome accession   NZ_CP134201
Coordinates   355735..356415 (+) Length   226 a.a.
NCBI ID   WP_404952948.1    Uniprot ID   -
Organism   Streptomyces sp. 147326     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 350735..361415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU97_RS01750 (RIU97_01750) - 351001..352335 (+) 1335 WP_404952943.1 hypothetical protein -
  RIU97_RS01755 (RIU97_01755) - 352289..352681 (-) 393 WP_404952944.1 hypothetical protein -
  RIU97_RS01760 (RIU97_01760) - 352792..353334 (-) 543 WP_404952945.1 HXXEE domain-containing protein -
  RIU97_RS01765 (RIU97_01765) - 353331..354278 (-) 948 WP_404952946.1 AEC family transporter -
  RIU97_RS01770 (RIU97_01770) - 354362..355738 (+) 1377 WP_404952947.1 sensor histidine kinase -
  RIU97_RS01775 (RIU97_01775) vraR 355735..356415 (+) 681 WP_404952948.1 response regulator Regulator
  RIU97_RS01780 (RIU97_01780) - 356578..357621 (+) 1044 WP_404952949.1 alpha/beta hydrolase -
  RIU97_RS01785 (RIU97_01785) - 357618..358847 (+) 1230 WP_404952950.1 acyltransferase -
  RIU97_RS01790 (RIU97_01790) - 358920..359342 (-) 423 WP_404952951.1 DUF350 domain-containing protein -
  RIU97_RS01795 (RIU97_01795) - 359438..361231 (+) 1794 WP_404952952.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24305.13 Da        Isoelectric Point: 5.3448

>NTDB_id=802449 RIU97_RS01775 WP_404952948.1 355735..356415(+) (vraR) [Streptomyces sp. 147326]
MTIRVIIVDDQAMVRAGFAALLSAQADIDVVGEAPDGRQGVLVSRSTHPDVVLMDVRMPEMDGLTAAREILDPPPGVVHR
PKVLMLTTFDIDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGEALLAPSVTRRLIADFVQQRPAPRKDPALRLNGL
TPRETEVLELIARGLSNQEIAGHLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYEAGLVRPGDSG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=802449 RIU97_RS01775 WP_404952948.1 355735..356415(+) (vraR) [Streptomyces sp. 147326]
TTGACCATCCGCGTGATCATCGTCGACGACCAGGCGATGGTGCGGGCCGGGTTCGCCGCGCTGCTGTCGGCGCAGGCCGA
CATCGACGTGGTGGGCGAGGCCCCCGACGGCCGGCAGGGGGTGCTGGTCTCCCGCTCCACGCACCCCGACGTGGTGCTGA
TGGACGTGCGGATGCCGGAGATGGACGGGCTGACGGCGGCCCGGGAGATCCTCGATCCCCCACCCGGGGTGGTGCACCGG
CCGAAGGTGCTCATGCTGACCACCTTCGACATCGACGACTACGTGTACGAGGCGCTGCGCGCCGGCGCCTCCGGCTTCCT
CCTGAAGGACGCCCCGCCGGCCGATCTGATCGCGGCGGTACGCGTCGTCGCCTCGGGCGAGGCGCTGCTGGCGCCGTCGG
TGACCCGGCGGCTCATCGCGGACTTCGTCCAGCAGCGGCCGGCTCCCCGAAAAGACCCGGCGCTGCGGCTGAACGGCCTC
ACCCCGCGGGAGACCGAGGTACTGGAACTCATCGCACGCGGCCTGTCGAACCAGGAGATCGCGGGGCATCTGGTGCTGGC
GGAGCAGACGGTGAAGACCCACATCGGACGGGTGCTGGCCAAACTCGACCTGCGGGACCGGGCCCAGGCCGTGATCTTCG
CCTACGAGGCGGGACTGGTCCGGCCGGGCGACTCCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.081

97.788

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

37.004

100

0.372