Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RIU97_RS01695 Genome accession   NZ_CP134201
Coordinates   335419..336087 (-) Length   222 a.a.
NCBI ID   WP_404952931.1    Uniprot ID   -
Organism   Streptomyces sp. 147326     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 330419..341087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU97_RS01680 (RIU97_01680) - 333886..334389 (+) 504 WP_404962724.1 GNAT family N-acetyltransferase -
  RIU97_RS01685 (RIU97_01685) - 334459..335016 (+) 558 WP_404952929.1 hypothetical protein -
  RIU97_RS01690 (RIU97_01690) - 335035..335271 (-) 237 WP_404952930.1 hypothetical protein -
  RIU97_RS01695 (RIU97_01695) vraR 335419..336087 (-) 669 WP_404952931.1 response regulator Regulator
  RIU97_RS01700 (RIU97_01700) - 336084..337400 (-) 1317 WP_404952933.1 sensor histidine kinase -
  RIU97_RS01705 (RIU97_01705) - 337677..339875 (+) 2199 WP_404952934.1 MMPL family transporter -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23750.46 Da        Isoelectric Point: 4.7217

>NTDB_id=802448 RIU97_RS01695 WP_404952931.1 335419..336087(-) (vraR) [Streptomyces sp. 147326]
MIRVLIADDQPLVRRGLALILGPDPEFEVVGEAEDGARAVALAHELLPDVVVMDIRMPVLDGVQATEELARTLPSTRVLA
LSTFDMDEYVVAALRAGAYGFLPKDISPEELIAAVRIVHTGEAAVAPRLLTRLISAYVRTPVRPRSWAAETPAELTPREL
EIWRLLAGGRGNAEIALDLDISVSTVKNHITGIFGKLGVRDRAQAVIAAYESGLVAAGCTSG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=802448 RIU97_RS01695 WP_404952931.1 335419..336087(-) (vraR) [Streptomyces sp. 147326]
ATGATCCGCGTGCTCATAGCCGACGACCAGCCGCTGGTGCGGCGCGGCCTGGCCCTGATCCTGGGCCCCGACCCGGAGTT
CGAGGTCGTGGGCGAGGCCGAGGACGGGGCCCGGGCCGTCGCCCTCGCCCACGAGCTGCTGCCCGACGTGGTCGTCATGG
ACATCCGGATGCCGGTCCTCGACGGAGTGCAGGCCACCGAGGAACTCGCGCGGACGCTCCCCTCGACGCGCGTCCTCGCC
CTCAGCACCTTCGACATGGACGAGTACGTGGTCGCCGCCCTGCGCGCCGGCGCGTACGGCTTCCTGCCCAAGGACATCTC
CCCGGAGGAGCTGATCGCCGCCGTCCGCATCGTCCACACCGGCGAGGCCGCCGTCGCGCCGCGGCTGCTGACCCGGCTCA
TCTCCGCCTACGTACGGACCCCCGTGCGGCCGCGGTCGTGGGCCGCCGAGACCCCGGCCGAACTCACCCCGCGCGAGCTG
GAGATCTGGCGCCTGCTGGCCGGCGGCCGGGGCAACGCCGAGATCGCCCTGGACCTGGACATCAGCGTCTCCACGGTCAA
GAACCACATCACGGGCATCTTCGGCAAGCTGGGCGTCCGTGACCGTGCGCAGGCGGTGATCGCGGCCTATGAATCGGGCC
TGGTGGCGGCCGGTTGCACGAGCGGTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.187

96.396

0.387
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.383