Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   P3U43_RS06265 Genome accession   NZ_CP120062
Coordinates   1267268..1269640 (+) Length   790 a.a.
NCBI ID   WP_016998513.1    Uniprot ID   -
Organism   Mammaliicoccus lentus strain Dog127_L     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1262268..1274640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U43_RS06245 (P3U43_06245) sal(B) 1262577..1264202 (+) 1626 WP_016998509.1 ABC-F type ribosomal protection protein Sal(B) -
  P3U43_RS06250 (P3U43_06250) - 1264262..1265410 (+) 1149 WP_016998510.1 cysteine desulfurase family protein -
  P3U43_RS06255 (P3U43_06255) mnmA 1265403..1266512 (+) 1110 WP_016998511.1 tRNA 2-thiouridine(34) synthase MnmA -
  P3U43_RS06260 (P3U43_06260) - 1266600..1267265 (+) 666 WP_016998512.1 tetratricopeptide repeat protein -
  P3U43_RS06265 (P3U43_06265) recD2 1267268..1269640 (+) 2373 WP_016998513.1 ATP-dependent RecD-like DNA helicase Machinery gene
  P3U43_RS06270 (P3U43_06270) alaS 1269889..1272519 (+) 2631 WP_320424583.1 alanine--tRNA ligase -
  P3U43_RS06275 (P3U43_06275) - 1272586..1272855 (+) 270 WP_016998515.1 IreB family regulatory phosphoprotein -
  P3U43_RS06280 (P3U43_06280) ruvX 1272848..1273276 (+) 429 WP_016998516.1 Holliday junction resolvase RuvX -
  P3U43_RS06285 (P3U43_06285) - 1273299..1273604 (+) 306 WP_016998517.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 790 a.a.        Molecular weight: 89889.16 Da        Isoelectric Point: 4.6379

>NTDB_id=802423 P3U43_RS06265 WP_016998513.1 1267268..1269640(+) (recD2) [Mammaliicoccus lentus strain Dog127_L]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDHEVTIVGYFPQIVEGETYLFKGKVIEHPKYGKQLQAD
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVNKLGENALQKILDDPDVLEEIPKLNKQKRSTIVESIRENQAIERIM
IKLNELGFGPKLAMSIYQTYKEETMNIIKQSPYRLVMDINGIGFQRADQIAEQIGISKDHNERVVAGVNYYLDQQSLQNG
HTFLPIDILINGAYELLNHNQPEVVAKEQINDVIVEMSEESKIIIEDNNCFMPSLYYSEAKSVQIMHRLYQHQEDLKEIE
KSDLQLHIGEIEDMNDVSYAEGQKNALETAINNKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLDYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNNIPVSINEKHHDRSFISCNSNQIASVVEKVVQGA
VKKGYNMQDIQVLAPIYRGPAGINKLNQLLQDILNPKTEETRFLQYGEVEYREQDKVLQLINRPDDNVFNGDIGVVIGVY
KAEENALGKDVIIVDYEGNEITYTKQDLSEVTHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEENAFNQGIKTLGNGRMTSFDTKLKLYFSNDDTEEPTEIKNLILTEENMYEVDPMINMQNKTPYDFMK

Nucleotide


Download         Length: 2373 bp        

>NTDB_id=802423 P3U43_RS06265 WP_016998513.1 1267268..1269640(+) (recD2) [Mammaliicoccus lentus strain Dog127_L]
TTGGAAAATTTATCTTTATTTGATCTTTCACATGTTAAAGGTGAAGTTATTAGAATATTATTTCAAAATAGTGATAACTA
TTACACTGTTATAAAAGTTGATGTGATGGATTCAAATGAAGATTTTGACCATGAAGTCACTATAGTAGGGTACTTTCCTC
AAATTGTAGAAGGTGAAACTTATCTTTTTAAAGGTAAGGTTATTGAACATCCTAAATATGGAAAGCAACTTCAAGCTGAC
ACTTTCGAGAAAGAATTACCTCAAACGAAACAAGGTGTCATTCATTATTTGTCCAGTGATTTATTTAAAGGAATAGGTAA
GAAAACTGCAGAGACAATCGTCAATAAATTGGGTGAAAATGCACTACAAAAAATATTGGATGATCCAGATGTATTAGAAG
AAATACCTAAATTAAACAAACAAAAACGTAGTACTATAGTAGAATCTATAAGAGAAAATCAAGCGATAGAACGCATAATG
ATAAAGTTAAATGAATTAGGGTTTGGACCTAAACTAGCCATGAGTATTTATCAAACGTATAAAGAAGAAACAATGAACAT
CATAAAACAGTCTCCTTATCGATTAGTTATGGATATAAATGGTATTGGTTTTCAAAGAGCAGACCAAATCGCTGAACAAA
TTGGTATTTCAAAAGACCATAATGAACGTGTTGTGGCGGGTGTGAATTACTATTTAGATCAGCAATCGTTACAAAACGGT
CATACATTTTTACCGATTGATATTTTAATCAATGGTGCATATGAATTATTAAATCATAACCAACCTGAAGTTGTAGCAAA
AGAGCAAATTAATGATGTTATCGTTGAGATGAGTGAAGAAAGTAAAATTATAATAGAAGACAATAATTGTTTCATGCCAT
CTTTATATTACTCAGAAGCTAAAAGTGTTCAAATTATGCATAGATTGTATCAACACCAAGAAGATTTAAAAGAAATTGAA
AAAAGTGATTTACAACTTCATATTGGTGAAATAGAAGACATGAATGACGTTTCTTATGCTGAAGGGCAGAAGAATGCACT
CGAAACAGCCATCAATAATAAAATGATGTTATTAACAGGTGGTCCTGGTACAGGTAAGACGACTGTTATAAGAGGAATAT
GTGAGCTATATTCTGAAATTCATGGCGTTAGTTTGGATTATGATGATTATCAAGAAGGAACTGATTTTCCAATAGTTTTA
GCAGCTCCAACAGGAAGAGCAGCTAAAAGATTAAGTGAATCAACTGGTTTAGAAGCCATGACTATCCATAGATTGATAGG
TTGGAGTAAAGATACTCAACCTGATGATGTATTAGATAATGATATACATGCTCATTTAATTATATTGGATGAAATGTCTA
TGGTTGATACATGGTTAATGTACCAATTTTTAAGAGCAGTACCTGATTATGCGCAAATTATTTTTGTAGGTGATGAAGAT
CAATTACCTTCAGTTGGACCTGGTCAAATATTCAAAGATTTAATTGATTCAAAAGTCATTCCACGTGTGAACTTAACAGA
AGTATATAGGCAACAAGAAGGTTCATCAATCATTGATTTAGCACATAAAATAAAAAATAATATTCCAGTTTCTATTAATG
AAAAACATCATGACCGCTCATTTATCAGTTGTAACAGTAACCAAATTGCTTCAGTCGTTGAAAAAGTTGTTCAAGGTGCA
GTTAAAAAAGGATATAATATGCAAGATATTCAAGTTCTTGCGCCAATATATCGTGGTCCAGCTGGTATCAATAAGTTAAA
TCAATTACTTCAAGACATTTTAAATCCTAAAACTGAAGAAACAAGGTTTTTACAATACGGTGAAGTAGAGTATCGTGAAC
AGGATAAAGTACTACAGCTTATTAATAGACCGGACGATAACGTGTTTAATGGTGATATTGGTGTTGTTATAGGCGTATAT
AAAGCTGAAGAAAATGCTTTAGGGAAAGATGTTATTATCGTTGATTATGAGGGAAATGAAATAACTTACACGAAACAAGA
TTTATCAGAGGTTACACATGCATATTGTTGTTCAATTCATAAATCACAAGGCTCGGAATTTCCGATTGTTATCATGCCTA
TTGTTAGACAATACTTTAGAATGTTACAGAAAAACATTTTATATACTGGTTTAACAAGAGCAAAACAGTCTTTAGTTGTC
TGTGGTGAGGAAAATGCTTTTAATCAAGGTATTAAAACATTAGGAAATGGACGTATGACGTCTTTCGATACAAAACTTAA
ACTGTATTTTAGTAATGATGATACAGAGGAACCAACTGAAATCAAAAATTTGATACTGACAGAAGAAAATATGTATGAAG
TTGATCCAATGATAAACATGCAAAATAAAACACCTTATGACTTCATGAAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

AAA domain (AAA_30)

(339-546)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.252

100

0.505