Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RI106_RS05385 Genome accession   NZ_CP134071
Coordinates   1085763..1086749 (-) Length   328 a.a.
NCBI ID   WP_042909135.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 4233     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1080763..1091749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI106_RS05360 (RI106_05360) - 1081023..1081370 (-) 348 WP_001242102.1 hypothetical protein -
  RI106_RS05365 (RI106_05365) - 1081556..1082149 (+) 594 WP_103086504.1 CYTH domain-containing protein -
  RI106_RS05370 (RI106_05370) - 1082253..1082618 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  RI106_RS05375 (RI106_05375) yjbH 1082641..1083447 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  RI106_RS05380 (RI106_05380) pepF 1083907..1085715 (-) 1809 WP_000082725.1 oligoendopeptidase F Regulator
  RI106_RS05385 (RI106_05385) coiA 1085763..1086749 (-) 987 WP_042909135.1 competence protein CoiA Machinery gene
  RI106_RS05390 (RI106_05390) mecA 1086870..1087589 (-) 720 WP_001217728.1 adaptor protein MecA -
  RI106_RS05395 (RI106_05395) spxA 1087960..1088355 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  RI106_RS05400 (RI106_05400) trpS 1088650..1089639 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  RI106_RS05405 (RI106_05405) opp4C 1089681..1090562 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  RI106_RS05410 (RI106_05410) opp4B 1090574..1091536 (-) 963 WP_000915997.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38813.48 Da        Isoelectric Point: 9.6054

>NTDB_id=802407 RI106_RS05385 WP_042909135.1 1085763..1086749(-) (coiA) [Staphylococcus aureus strain 4233]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKLGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGFIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=802407 RI106_RS05385 WP_042909135.1 1085763..1086749(-) (coiA) [Staphylococcus aureus strain 4233]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAACTGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCCGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTTTATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

98.171

100

0.982
  coiA Staphylococcus aureus MW2

97.561

100

0.976