Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RI106_RS01990 Genome accession   NZ_CP134071
Coordinates   371336..372610 (-) Length   424 a.a.
NCBI ID   WP_045173051.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 4233     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 366336..377610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI106_RS01965 (RI106_01965) hisS 366897..368159 (+) 1263 WP_000590826.1 histidine--tRNA ligase -
  RI106_RS01970 (RI106_01970) aspS 368175..369941 (+) 1767 WP_000044799.1 aspartate--tRNA ligase -
  RI106_RS01980 (RI106_01980) - 370274..370402 (+) 129 WP_001790559.1 hypothetical protein -
  RI106_RS01985 (RI106_01985) - 370402..371175 (+) 774 WP_000682646.1 ThiF family adenylyltransferase -
  RI106_RS01990 (RI106_01990) rarA 371336..372610 (-) 1275 WP_045173051.1 replication-associated recombination protein A Machinery gene
  RI106_RS01995 (RI106_01995) cymR 372695..373117 (+) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  RI106_RS02000 (RI106_02000) - 373217..373399 (+) 183 WP_000752909.1 CsbD family protein -
  RI106_RS02005 (RI106_02005) - 373439..373585 (+) 147 WP_000009238.1 SAS049 family protein -
  RI106_RS02010 (RI106_02010) - 373822..374835 (-) 1014 WP_000985872.1 LLM class flavin-dependent oxidoreductase -
  RI106_RS02015 (RI106_02015) - 375147..376289 (+) 1143 WP_000409167.1 cysteine desulfurase family protein -
  RI106_RS02020 (RI106_02020) mnmA 376290..377408 (+) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47266.85 Da        Isoelectric Point: 8.3539

>NTDB_id=802373 RI106_RS01990 WP_045173051.1 371336..372610(-) (rarA) [Staphylococcus aureus strain 4233]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDDENGLKTYQLKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=802373 RI106_RS01990 WP_045173051.1 371336..372610(-) (rarA) [Staphylococcus aureus strain 4233]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTCGAGTTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGATGAGAATGGTTTGAAAACATATCAACTCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGCCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAC
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

AAA C-terminal domain (AAA_assoc_2)

(174-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684