Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   P3U28_RS08030 Genome accession   NZ_CP120050
Coordinates   1643374..1644060 (-) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Dog132     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1638374..1649060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U28_RS08010 (P3U28_08010) rpsT 1639289..1639540 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  P3U28_RS08015 (P3U28_08015) holA 1639585..1640559 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  P3U28_RS08020 (P3U28_08020) - 1640616..1642816 (-) 2201 Protein_1576 DNA internalization-related competence protein ComEC/Rec2 -
  P3U28_RS08025 (P3U28_08025) - 1642821..1643282 (-) 462 WP_000439693.1 ComE operon protein 2 -
  P3U28_RS08030 (P3U28_08030) comEA 1643374..1644060 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  P3U28_RS08035 (P3U28_08035) - 1644100..1644816 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  P3U28_RS08040 (P3U28_08040) rsfS 1644819..1645172 (-) 354 WP_320409479.1 ribosome silencing factor -
  P3U28_RS08045 (P3U28_08045) yqeK 1645173..1645757 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  P3U28_RS08050 (P3U28_08050) nadD 1645747..1646316 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  P3U28_RS08055 (P3U28_08055) yhbY 1646319..1646609 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  P3U28_RS08060 (P3U28_08060) aroE 1646613..1647419 (-) 807 WP_072497282.1 shikimate dehydrogenase -
  P3U28_RS08065 (P3U28_08065) yqeH 1647433..1648533 (-) 1101 WP_072497283.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=802246 P3U28_RS08030 WP_001788928.1 1643374..1644060(-) (comEA) [Staphylococcus aureus strain Dog132]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=802246 P3U28_RS08030 WP_001788928.1 1643374..1644060(-) (comEA) [Staphylococcus aureus strain Dog132]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969