Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   P3U74_RS02985 Genome accession   NZ_CP120047
Coordinates   592632..593201 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Dog133     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 587632..598201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U74_RS02960 (P3U74_02960) cysE 588845..589492 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  P3U74_RS02965 (P3U74_02965) cysS 589476..590876 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  P3U74_RS02970 (P3U74_02970) - 590869..591273 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  P3U74_RS02975 (P3U74_02975) rlmB 591281..592027 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  P3U74_RS02980 (P3U74_02980) - 592027..592551 (+) 525 WP_000664732.1 NYN domain-containing protein -
  P3U74_RS02985 (P3U74_02985) sigH 592632..593201 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  P3U74_RS02990 (P3U74_02990) rpmG 593316..593459 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  P3U74_RS02995 (P3U74_02995) secE 593515..593697 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  P3U74_RS03000 (P3U74_03000) nusG 593710..594258 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  P3U74_RS03005 (P3U74_03005) rplK 594439..594861 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  P3U74_RS03010 (P3U74_03010) rplA 595069..595761 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  P3U74_RS03015 (P3U74_03015) rplJ 596033..596533 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  P3U74_RS03020 (P3U74_03020) rplL 596576..596944 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  P3U74_RS03025 (P3U74_03025) - 597119..597727 (+) 609 WP_072497514.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=802185 P3U74_RS02985 WP_000872873.1 592632..593201(+) (sigH) [Staphylococcus aureus strain Dog133]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=802185 P3U74_RS02985 WP_000872873.1 592632..593201(+) (sigH) [Staphylococcus aureus strain Dog133]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984