Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | P3U75_RS14245 | Genome accession | NZ_CP120028 |
| Coordinates | 2802130..2802657 (-) | Length | 175 a.a. |
| NCBI ID | WP_025906200.1 | Uniprot ID | A0A1X0TQ72 |
| Organism | Mammaliicoccus sciuri strain Dog142 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2784760..2801434 | 2802130..2802657 | flank | 696 |
Gene organization within MGE regions
Location: 2784760..2802657
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P3U75_RS14120 (P3U75_14110) | - | 2784760..2785542 (+) | 783 | WP_323707887.1 | hypothetical protein | - |
| P3U75_RS14125 (P3U75_14115) | - | 2785495..2786415 (-) | 921 | WP_323707888.1 | PhzF family phenazine biosynthesis protein | - |
| P3U75_RS14130 (P3U75_14120) | - | 2786455..2786859 (-) | 405 | WP_204207568.1 | nucleoside 2-deoxyribosyltransferase | - |
| P3U75_RS14135 (P3U75_14125) | - | 2786885..2787433 (-) | 549 | WP_204207567.1 | nucleotidyltransferase family protein | - |
| P3U75_RS14140 (P3U75_14130) | - | 2788363..2788830 (+) | 468 | WP_204207566.1 | hypothetical protein | - |
| P3U75_RS14145 (P3U75_14135) | - | 2789078..2789434 (-) | 357 | WP_323707889.1 | hypothetical protein | - |
| P3U75_RS14150 (P3U75_14140) | - | 2790486..2790929 (-) | 444 | WP_159315813.1 | phage scaffolding protein | - |
| P3U75_RS14155 (P3U75_14145) | - | 2790940..2791395 (-) | 456 | WP_159315814.1 | helix-turn-helix domain-containing protein | - |
| P3U75_RS14160 (P3U75_14150) | - | 2791395..2791973 (-) | 579 | WP_323707890.1 | hypothetical protein | - |
| P3U75_RS14165 (P3U75_14155) | - | 2791984..2792478 (-) | 495 | WP_323707891.1 | hypothetical protein | - |
| P3U75_RS14170 (P3U75_14160) | - | 2792539..2793102 (-) | 564 | WP_323707892.1 | hypothetical protein | - |
| P3U75_RS14175 (P3U75_14165) | - | 2793828..2794028 (-) | 201 | WP_323707893.1 | hypothetical protein | - |
| P3U75_RS14180 (P3U75_14170) | - | 2794169..2794366 (-) | 198 | WP_323707894.1 | hypothetical protein | - |
| P3U75_RS14185 (P3U75_14175) | - | 2794378..2795256 (-) | 879 | WP_323707895.1 | DnaA ATPase domain-containing protein | - |
| P3U75_RS14190 (P3U75_14180) | - | 2795271..2796104 (-) | 834 | WP_323707896.1 | DnaD domain protein | - |
| P3U75_RS14195 (P3U75_14185) | - | 2796183..2796377 (-) | 195 | WP_323707897.1 | hypothetical protein | - |
| P3U75_RS14200 (P3U75_14190) | - | 2796370..2796564 (-) | 195 | WP_323707898.1 | pathogenicity island protein | - |
| P3U75_RS14205 (P3U75_14195) | - | 2796566..2796925 (-) | 360 | WP_323707899.1 | hypothetical protein | - |
| P3U75_RS14210 (P3U75_14200) | - | 2796936..2797202 (-) | 267 | WP_323707900.1 | helix-turn-helix domain-containing protein | - |
| P3U75_RS14215 (P3U75_14205) | - | 2797206..2797427 (-) | 222 | WP_323707901.1 | helix-turn-helix transcriptional regulator | - |
| P3U75_RS14220 (P3U75_14210) | - | 2797602..2798282 (+) | 681 | WP_323707902.1 | helix-turn-helix transcriptional regulator | - |
| P3U75_RS14225 (P3U75_14215) | - | 2798303..2798512 (+) | 210 | WP_323707903.1 | hypothetical protein | - |
| P3U75_RS14230 (P3U75_14220) | - | 2798623..2799846 (+) | 1224 | WP_323707904.1 | site-specific integrase | - |
| P3U75_RS14235 (P3U75_14225) | - | 2799863..2801434 (+) | 1572 | WP_323707905.1 | SIR2 family protein | - |
| P3U75_RS14240 (P3U75_14230) | rpsR | 2801828..2802070 (-) | 243 | WP_025906198.1 | 30S ribosomal protein S18 | - |
| P3U75_RS14245 (P3U75_14235) | ssbA | 2802130..2802657 (-) | 528 | WP_025906200.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19589.21 Da Isoelectric Point: 4.7512
>NTDB_id=801930 P3U75_RS14245 WP_025906200.1 2802130..2802657(-) (ssbA) [Mammaliicoccus sciuri strain Dog142]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=801930 P3U75_RS14245 WP_025906200.1 2802130..2802657(-) (ssbA) [Mammaliicoccus sciuri strain Dog142]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAACCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGACAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAACCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AACGCTAATGGCCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAACCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGACAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAACCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AACGCTAATGGCCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
62.222 |
100 |
0.64 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.514 |
100 |
0.537 |