Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | P3U75_RS06935 | Genome accession | NZ_CP120028 |
| Coordinates | 1377730..1378632 (+) | Length | 300 a.a. |
| NCBI ID | WP_058611612.1 | Uniprot ID | - |
| Organism | Mammaliicoccus sciuri strain Dog142 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1372730..1383632
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P3U75_RS06895 (P3U75_06885) | - | 1372814..1373368 (+) | 555 | WP_058611616.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| P3U75_RS06900 (P3U75_06890) | - | 1373369..1374817 (+) | 1449 | WP_058611615.1 | rhomboid family protein | - |
| P3U75_RS06905 (P3U75_06895) | - | 1374822..1375013 (+) | 192 | WP_078099923.1 | YqgQ family protein | - |
| P3U75_RS06910 (P3U75_06900) | - | 1375010..1375981 (+) | 972 | WP_025904167.1 | ROK family glucokinase | - |
| P3U75_RS06915 (P3U75_06905) | - | 1375981..1376295 (+) | 315 | WP_058611614.1 | MTH1187 family thiamine-binding protein | - |
| P3U75_RS06920 (P3U75_06910) | - | 1376325..1376564 (-) | 240 | WP_016911885.1 | DUF2759 domain-containing protein | - |
| P3U75_RS06925 (P3U75_06915) | - | 1376662..1377294 (+) | 633 | WP_058611613.1 | MBL fold metallo-hydrolase | - |
| P3U75_RS06930 (P3U75_06920) | - | 1377328..1377576 (-) | 249 | WP_025904960.1 | DUF2626 family protein | - |
| P3U75_RS06935 (P3U75_06925) | comGA | 1377730..1378632 (+) | 903 | WP_058611612.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| P3U75_RS06940 (P3U75_06930) | comGB | 1378622..1379662 (+) | 1041 | WP_077152202.1 | competence type IV pilus assembly protein ComGB | - |
| P3U75_RS06945 (P3U75_06935) | comGC | 1379677..1379994 (+) | 318 | WP_323707958.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| P3U75_RS06950 (P3U75_06940) | - | 1380023..1380421 (+) | 399 | WP_049319406.1 | hypothetical protein | - |
| P3U75_RS06955 (P3U75_06945) | comGE | 1380405..1380686 (+) | 282 | WP_058611610.1 | competence type IV pilus minor pilin ComGE | - |
| P3U75_RS06960 (P3U75_06950) | - | 1380661..1381095 (+) | 435 | WP_049318781.1 | competence type IV pilus minor pilin ComGF | - |
| P3U75_RS06965 (P3U75_06955) | - | 1381330..1381818 (+) | 489 | WP_058611609.1 | shikimate kinase | - |
| P3U75_RS06970 (P3U75_06960) | gcvT | 1382011..1383099 (+) | 1089 | WP_058611608.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 300 a.a. Molecular weight: 34405.30 Da Isoelectric Point: 6.1198
>NTDB_id=801914 P3U75_RS06935 WP_058611612.1 1377730..1378632(+) (comGA) [Mammaliicoccus sciuri strain Dog142]
MEKLFKSIINDAVNSNASDIHFVPLNDDKVFVQMRINGDNIPYDLDLDFNLYSRLLIYMKFIAHLDVSERNKAQSGQYLF
EHDIHYYLRISTIPISLGIESSSIRITPQHFNHSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKAILRCDPDVIMIGEIRDDITAKQVIQASLSGHLVLSTMHASD
TIGAIHRLVELGVTVEQIKQGISCITNQRLVKKCDEARTLDMSYIFKDDIIKYMENDYET
MEKLFKSIINDAVNSNASDIHFVPLNDDKVFVQMRINGDNIPYDLDLDFNLYSRLLIYMKFIAHLDVSERNKAQSGQYLF
EHDIHYYLRISTIPISLGIESSSIRITPQHFNHSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKAILRCDPDVIMIGEIRDDITAKQVIQASLSGHLVLSTMHASD
TIGAIHRLVELGVTVEQIKQGISCITNQRLVKKCDEARTLDMSYIFKDDIIKYMENDYET
Nucleotide
Download Length: 903 bp
>NTDB_id=801914 P3U75_RS06935 WP_058611612.1 1377730..1378632(+) (comGA) [Mammaliicoccus sciuri strain Dog142]
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTGTCAATTCTAATGCGAGTGATATTCATTTTGTACCTTTAAACGA
TGATAAAGTCTTTGTCCAAATGAGGATAAATGGCGATAATATACCTTATGATTTAGATTTAGACTTTAATTTGTATAGTA
GGCTACTTATTTATATGAAATTTATCGCTCATCTAGATGTAAGTGAACGAAATAAAGCACAAAGTGGTCAATATTTATTT
GAACATGACATACATTACTATTTAAGAATTTCCACGATACCTATCAGTTTAGGGATAGAATCTAGTTCCATTAGAATAAC
CCCTCAACATTTTAATCATTCACAAGTGAAATCAGAGCATCAATCATATAACGTTCTACAAAACAGAATGTATCAATCAG
AAGGGCTATTTTTATTTACGGGTCCAACTGGATCAGGTAAGACTACATTAATGTATGAACTTATGTACGCATTAAAGAGA
GAGAAGAATAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAAGCCATTTTAAGATGTGATCCGGACGTTATTATGATTGGAGAGATAA
GAGATGATATTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCATGCGAGTGAT
ACAATCGGGGCAATCCACCGACTAGTTGAGCTAGGTGTAACAGTCGAACAAATTAAACAAGGTATTTCATGTATTACGAA
CCAACGTCTTGTGAAGAAATGTGATGAAGCAAGAACATTAGATATGTCCTATATTTTTAAAGATGACATTATTAAATATA
TGGAGAATGATTATGAAACGTAA
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTGTCAATTCTAATGCGAGTGATATTCATTTTGTACCTTTAAACGA
TGATAAAGTCTTTGTCCAAATGAGGATAAATGGCGATAATATACCTTATGATTTAGATTTAGACTTTAATTTGTATAGTA
GGCTACTTATTTATATGAAATTTATCGCTCATCTAGATGTAAGTGAACGAAATAAAGCACAAAGTGGTCAATATTTATTT
GAACATGACATACATTACTATTTAAGAATTTCCACGATACCTATCAGTTTAGGGATAGAATCTAGTTCCATTAGAATAAC
CCCTCAACATTTTAATCATTCACAAGTGAAATCAGAGCATCAATCATATAACGTTCTACAAAACAGAATGTATCAATCAG
AAGGGCTATTTTTATTTACGGGTCCAACTGGATCAGGTAAGACTACATTAATGTATGAACTTATGTACGCATTAAAGAGA
GAGAAGAATAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAAGCCATTTTAAGATGTGATCCGGACGTTATTATGATTGGAGAGATAA
GAGATGATATTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCATGCGAGTGAT
ACAATCGGGGCAATCCACCGACTAGTTGAGCTAGGTGTAACAGTCGAACAAATTAAACAAGGTATTTCATGTATTACGAA
CCAACGTCTTGTGAAGAAATGTGATGAAGCAAGAACATTAGATATGTCCTATATTTTTAAAGATGACATTATTAAATATA
TGGAGAATGATTATGAAACGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
52.143 |
93.333 |
0.487 |
| comGA | Staphylococcus aureus N315 |
52.143 |
93.333 |
0.487 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
40.58 |
92 |
0.373 |
| pilB | Haemophilus influenzae Rd KW20 |
35.032 |
100 |
0.367 |