Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   P3U75_RS00245 Genome accession   NZ_CP120028
Coordinates   50281..51630 (-) Length   449 a.a.
NCBI ID   WP_323707913.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain Dog142     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 45281..56630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U75_RS00215 (P3U75_00215) - 45359..46558 (+) 1200 WP_323707909.1 restriction endonuclease subunit S -
  P3U75_RS00220 (P3U75_00220) - 46663..46884 (-) 222 WP_323707910.1 hypothetical protein -
  P3U75_RS00225 (P3U75_00225) - 46899..47402 (-) 504 WP_323707911.1 DUF1643 domain-containing protein -
  P3U75_RS00230 (P3U75_00230) - 47417..47728 (-) 312 WP_323707959.1 DUF960 family protein -
  P3U75_RS00235 (P3U75_00235) - 47813..48163 (-) 351 WP_071561912.1 SAUGI family uracil-DNA glycosylase inhibitor -
  P3U75_RS00240 (P3U75_00240) ccrB 48631..50259 (-) 1629 WP_323707912.1 cassette chromosome recombinase CcrB Machinery gene
  P3U75_RS00245 (P3U75_00245) ccrA 50281..51630 (-) 1350 WP_323707913.1 cassette chromosome recombinase CcrA Machinery gene
  P3U75_RS00250 (P3U75_00250) - 51809..52099 (-) 291 WP_107577895.1 hypothetical protein -
  P3U75_RS00255 (P3U75_00255) cch1 52190..53983 (-) 1794 WP_323707914.1 cassette chromosome replicative helicase -
  P3U75_RS00260 (P3U75_00260) ssb 53983..54273 (-) 291 WP_232138824.1 cassette chromosome ssDNA-binding protein -
  P3U75_RS00265 (P3U75_00265) - 54435..55991 (-) 1557 WP_323707915.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52238.90 Da        Isoelectric Point: 9.9831

>NTDB_id=801901 P3U75_RS00245 WP_323707913.1 50281..51630(-) (ccrA) [Mammaliicoccus sciuri strain Dog142]
MKQAIGYLRQSTLKQQSLASQKLTIKALTERYHIQHITFYSDKQSGRTDKRDGYKQITELIQQGNCDILCCYRLNRLHRN
LKNALTLIKLCQKHHIHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYR
NDTFTINQDEAPTVKAIFHYYLQGYGYKKIAQYLETDDKYINRKPYQVRAIIMNPNYCGRVINQYGQYDNMFPSIVSTNI
YEQAQAIRSQKHTKRTPSDNQLQKKIKCPYCGSTLTNMTIRKKHHTLRYYVCPQNMNASRFVCAFKGINAQVLETSVLAT
CQDFFQNQQLYSKINHTIQQRLKRQRDIEAKHTLTQEQLIDKLAKGMIDAETFRNQSQSVLQKRKTISSISDTQLQTSLQ
KVIQKSFTLNMLHPYIDEIRIAKNKELSGIYLKDEPLNIVNQAVQSSTA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=801901 P3U75_RS00245 WP_323707913.1 50281..51630(-) (ccrA) [Mammaliicoccus sciuri strain Dog142]
ATGAAACAAGCAATTGGTTATTTACGCCAAAGTACACTCAAACAACAATCACTCGCATCACAAAAACTAACGATTAAGGC
ATTAACTGAAAGGTATCATATTCAGCACATTACCTTCTATAGTGACAAACAGTCTGGGCGTACAGACAAACGTGATGGAT
ACAAACAGATTACCGAACTTATCCAACAGGGTAACTGTGACATATTGTGTTGTTACCGACTAAATAGACTACATCGTAAT
TTGAAAAACGCATTAACACTCATTAAGTTATGTCAAAAACACCATATTCATATATTGAGTGTACATGATGGCTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAACTTAATATATTCATAAGTCTCGCAGAATTAGAGTCCGATAATATTGGTGAAC
AAGTCAAAAATGGGCTTAGAGAAAAGGCAAAACAAGGTAAACTCATAACGACTCATGCGCCATTCGGTTATCACTATCGA
AATGATACATTCACAATTAATCAAGATGAAGCACCAACGGTGAAGGCAATATTCCATTACTACCTACAAGGCTATGGTTA
TAAGAAAATTGCGCAATACCTAGAAACAGATGATAAATACATTAATCGGAAACCCTACCAAGTACGCGCTATTATCATGA
ACCCTAATTATTGTGGTCGCGTTATTAATCAATATGGACAATATGACAACATGTTCCCATCTATTGTTTCGACCAATATA
TACGAACAAGCTCAAGCAATACGGTCACAAAAACATACCAAACGGACTCCATCAGATAATCAACTTCAGAAGAAAATAAA
ATGTCCATATTGTGGATCAACCCTGACTAATATGACGATTAGAAAAAAGCACCATACGTTACGTTATTATGTCTGTCCTC
AAAATATGAATGCATCACGTTTTGTCTGTGCATTCAAAGGAATCAATGCGCAAGTATTAGAAACAAGTGTCTTAGCGACT
TGTCAGGACTTCTTTCAGAACCAACAGCTCTATTCAAAAATCAACCATACAATTCAACAACGACTCAAAAGACAAAGGGA
CATAGAAGCTAAACATACACTCACGCAAGAACAACTGATAGATAAACTTGCCAAAGGTATGATTGATGCTGAAACATTCA
GGAATCAGTCTCAATCAGTGCTTCAAAAGCGCAAAACCATATCCTCAATAAGTGATACTCAGTTGCAAACATCACTACAA
AAGGTTATACAGAAAAGTTTCACTTTAAACATGCTGCATCCCTATATTGATGAAATTCGCATTGCTAAAAATAAAGAACT
AAGCGGCATCTATTTAAAAGATGAGCCACTAAACATTGTTAATCAAGCGGTACAATCATCAACTGCCTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(169-250)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

80.537

99.555

0.802
  ccrA Staphylococcus aureus N315

73.274

100

0.733