Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   P3U75_RS00240 Genome accession   NZ_CP120028
Coordinates   48631..50259 (-) Length   542 a.a.
NCBI ID   WP_323707912.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain Dog142     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 43631..55259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U75_RS00205 (P3U75_00205) dhaM 43737..44111 (+) 375 WP_017175659.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  P3U75_RS00210 (P3U75_00210) - 44702..44908 (-) 207 WP_323707908.1 hypothetical protein -
  P3U75_RS00215 (P3U75_00215) - 45359..46558 (+) 1200 WP_323707909.1 restriction endonuclease subunit S -
  P3U75_RS00220 (P3U75_00220) - 46663..46884 (-) 222 WP_323707910.1 hypothetical protein -
  P3U75_RS00225 (P3U75_00225) - 46899..47402 (-) 504 WP_323707911.1 DUF1643 domain-containing protein -
  P3U75_RS00230 (P3U75_00230) - 47417..47728 (-) 312 WP_323707959.1 DUF960 family protein -
  P3U75_RS00235 (P3U75_00235) - 47813..48163 (-) 351 WP_071561912.1 SAUGI family uracil-DNA glycosylase inhibitor -
  P3U75_RS00240 (P3U75_00240) ccrB 48631..50259 (-) 1629 WP_323707912.1 cassette chromosome recombinase CcrB Machinery gene
  P3U75_RS00245 (P3U75_00245) ccrA 50281..51630 (-) 1350 WP_323707913.1 cassette chromosome recombinase CcrA Machinery gene
  P3U75_RS00250 (P3U75_00250) - 51809..52099 (-) 291 WP_107577895.1 hypothetical protein -
  P3U75_RS00255 (P3U75_00255) cch1 52190..53983 (-) 1794 WP_323707914.1 cassette chromosome replicative helicase -
  P3U75_RS00260 (P3U75_00260) ssb 53983..54273 (-) 291 WP_232138824.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62557.50 Da        Isoelectric Point: 9.6419

>NTDB_id=801900 P3U75_RS00240 WP_323707912.1 48631..50259(-) (ccrB) [Mammaliicoccus sciuri strain Dog142]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCNFHHFEVTDIYADRGISGKSMNRPELQRMLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKMANALNHKGYVTKKGNPFSTSAIAYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDTPVVADGKHSPIISQELWDKVHSRMKRVSQKPQVHGKGTNLLTGIIRCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIIKSDKVLKQVVERVNQDSQIDMAALNHDIAYKQQQFD
EISTKLKNLIQTIEDNPDLTSALKPTIHQYEKQLNDITNQMNQLKQQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDINHNKQFYVTLKLNNEIIKQLFNNIPIDEVLLSTSSLFLPQTIYLQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=801900 P3U75_RS00240 WP_323707912.1 48631..50259(-) (ccrB) [Mammaliicoccus sciuri strain Dog142]
ATGCAACAACTCAAACAAAAACGTGTCGGTATTTATGTCCGTGTATCCACTGAAATGCAAAGTACAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATATTGTAACTTCCATCATTTTGAAGTCACAGATATTTACGCTGATCGTGGAA
TCTCAGGAAAATCTATGAACCGTCCTGAGCTCCAACGTATGTTGAAGGATGCGAATGAAGGTCATATCGATTGTGTCATG
GTGTATAAAACAAACCGACTTGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCCTGTCTGAGCGTATGGAAGTTAATACAAGCAGTGGTAAACTGATGTTACAAATACTTGCGAGCTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTCATGGGTCAAACCAGACGTGCACAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCGGATAGTAAGCATGAACTCATGATAAACCAACATGAAGCGAATATCGTCAAATA
TATATTTGAGTCATATGCTAAAGGCCACGGATATCGTAAAATGGCTAATGCACTTAATCATAAAGGTTATGTCACTAAGA
AAGGTAATCCATTCAGTACATCAGCTATAGCTTATATCCTTTCCAATCCTTTTTACATTGGTAAAATACAATTTGCGAAG
TATAAAGATTGGAATGAAAAGCGACGTAAAGGTCTCAATGATACTCCTGTAGTAGCTGACGGGAAGCATTCACCTATCAT
TAGTCAAGAACTATGGGATAAAGTACATTCACGTATGAAGCGAGTTAGTCAAAAACCTCAAGTTCATGGAAAAGGGACCA
ATCTATTAACGGGTATTATTCGCTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGTAGTAACTTTCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCTGACGTGATTGAGAAATACGTTATGGATCAAATACTTGAAATTATCAAAAGCGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAGTCAAATTGATATGGCTGCACTTAACCATGATATCGCATATAAGCAACAACAATTTGAT
GAAATAAGCACTAAACTAAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACTAT
TCATCAATATGAAAAACAACTCAATGACATTACGAATCAAATGAATCAGCTCAAGCAGCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCTATGGATAAATCACAGCTCAAA
GCATTATATCTCACAGTCATTGACCGAATCGATATTCGTAAAGATATTAATCATAATAAACAATTTTATGTCACACTCAA
GCTTAATAATGAAATTATCAAACAACTTTTCAATAATATCCCTATCGACGAAGTGCTACTCAGCACTTCGTCTTTATTTT
TACCTCAAACTATTTATCTTCAAATTTAG

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Recombinase (Recombinase)

(180-280)

Resolvase, N terminal domain (Resolvase)

(11-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

85.609

100

0.856