Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P3U40_RS10315 Genome accession   NZ_CP120025
Coordinates   2090273..2090668 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Dog145     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2085273..2095668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U40_RS10290 (P3U40_10290) thiE 2085679..2086320 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  P3U40_RS10295 (P3U40_10295) thiM 2086322..2087113 (-) 792 WP_001108480.1 hydroxyethylthiazole kinase -
  P3U40_RS10300 (P3U40_10300) thiD 2087097..2087927 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  P3U40_RS10305 (P3U40_10305) tenA 2087920..2088609 (-) 690 WP_000396079.1 thiaminase II -
  P3U40_RS10310 (P3U40_10310) sceD 2089189..2089884 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  P3U40_RS10315 (P3U40_10315) ssb 2090273..2090668 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  P3U40_RS10320 (P3U40_10320) - 2090862..2091302 (+) 441 WP_000846746.1 YwpF-like family protein -
  P3U40_RS10325 (P3U40_10325) fabZ 2091361..2091801 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  P3U40_RS10330 (P3U40_10330) murA 2091835..2093100 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  P3U40_RS10335 (P3U40_10335) - 2093211..2093444 (-) 234 WP_000384523.1 DUF1146 family protein -
  P3U40_RS10340 (P3U40_10340) - 2093576..2093668 (-) 93 WP_031835036.1 hypothetical protein -
  P3U40_RS10345 (P3U40_10345) - 2094005..2094409 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=801858 P3U40_RS10315 WP_000932694.1 2090273..2090668(-) (ssb) [Staphylococcus aureus strain Dog145]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=801858 P3U40_RS10315 WP_000932694.1 2090273..2090668(-) (ssb) [Staphylococcus aureus strain Dog145]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992