Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   P3T93_RS08895 Genome accession   NZ_CP119997
Coordinates   1816343..1816906 (-) Length   187 a.a.
NCBI ID   WP_103211137.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain Dog166     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1811343..1821906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T93_RS08850 (P3T93_08855) - 1811710..1812648 (+) 939 WP_019469099.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  P3T93_RS08855 (P3T93_08860) - 1812737..1813288 (-) 552 WP_040030134.1 GNAT family N-acetyltransferase -
  P3T93_RS08860 (P3T93_08865) - 1813465..1813677 (+) 213 WP_019469097.1 TM2 domain-containing protein -
  P3T93_RS08865 (P3T93_08870) - 1813784..1813873 (+) 90 WP_019469096.1 SAR1012 family small protein -
  P3T93_RS08870 (P3T93_08875) - 1814203..1814391 (-) 189 Protein_1716 hypothetical protein -
  P3T93_RS08875 (P3T93_08880) - 1814542..1814829 (+) 288 WP_230620704.1 hypothetical protein -
  P3T93_RS08880 (P3T93_08885) - 1815659..1815941 (+) 283 Protein_1718 tyrosine-type recombinase/integrase -
  P3T93_RS08895 (P3T93_08900) comK/comK1 1816343..1816906 (-) 564 WP_103211137.1 competence protein ComK Regulator
  P3T93_RS08900 (P3T93_08905) - 1817158..1817376 (+) 219 WP_019469091.1 IDEAL domain-containing protein -
  P3T93_RS08905 (P3T93_08910) - 1817455..1818444 (-) 990 WP_019469090.1 lipoate--protein ligase -
  P3T93_RS08910 (P3T93_08915) - 1818642..1818827 (+) 186 WP_002508073.1 DUF2187 family protein -
  P3T93_RS08915 (P3T93_08920) - 1818833..1819435 (+) 603 WP_019469089.1 CPBP family glutamic-type intramembrane protease -
  P3T93_RS08920 (P3T93_08925) - 1819643..1821151 (-) 1509 WP_019469088.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 22058.39 Da        Isoelectric Point: 9.6647

>NTDB_id=801439 P3T93_RS08895 WP_103211137.1 1816343..1816906(-) (comK/comK1) [Staphylococcus cohnii strain Dog166]
MIQPYIIKKGDMTLQPCHLPVGQYEGTRVLRYKEDESTIKERTHKIIDRSCRFYGSSYVFKKEDTIRITGISSKPPILFT
PLFPTYFFPTHSDKKTQNTWINIHYVQSIKSLKDKKCRVNFVDNQSIVVNISAHSMQHQYLNGIYYYYMMDRAARVATFD
PESPIDYRKPQLNIYEALAKYSLFESK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=801439 P3T93_RS08895 WP_103211137.1 1816343..1816906(-) (comK/comK1) [Staphylococcus cohnii strain Dog166]
ATGATACAACCGTATATTATTAAAAAAGGTGATATGACATTACAGCCGTGCCATTTGCCTGTTGGCCAATATGAAGGAAC
ACGAGTACTAAGATATAAAGAAGACGAAAGTACGATAAAAGAACGCACCCACAAAATCATTGATCGTTCTTGTAGATTTT
ATGGTAGTAGCTATGTTTTTAAAAAAGAGGACACTATTCGTATTACAGGCATTAGTAGCAAGCCCCCAATTTTATTTACT
CCATTATTTCCCACTTATTTTTTCCCAACACATTCTGATAAAAAAACACAAAACACGTGGATTAATATCCATTATGTTCA
AAGTATCAAATCACTAAAAGATAAAAAGTGTAGAGTGAACTTTGTTGATAATCAATCTATCGTTGTGAACATCTCAGCTC
ATAGTATGCAACATCAATATTTAAATGGTATTTATTACTATTATATGATGGATAGAGCAGCAAGAGTTGCCACTTTTGAT
CCAGAGTCTCCCATAGATTATAGAAAACCGCAATTAAATATATATGAAGCACTCGCTAAGTATTCTTTATTTGAAAGTAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

53.005

97.861

0.519
  comK/comK1 Staphylococcus aureus N315

53.005

97.861

0.519