Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P3T93_RS04100 Genome accession   NZ_CP119997
Coordinates   839357..839776 (+) Length   139 a.a.
NCBI ID   WP_019468308.1    Uniprot ID   A0A0M2P185
Organism   Staphylococcus cohnii strain Dog166     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 834357..844776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T93_RS04075 (P3T93_04075) - 835758..836162 (+) 405 WP_019468303.1 F0F1 ATP synthase subunit epsilon -
  P3T93_RS04080 (P3T93_04080) - 836579..836812 (+) 234 WP_019468304.1 DUF1146 family protein -
  P3T93_RS04085 (P3T93_04085) murA 836914..838179 (+) 1266 WP_064263778.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  P3T93_RS04090 (P3T93_04090) fabZ 838238..838675 (+) 438 WP_019468306.1 3-hydroxyacyl-ACP dehydratase FabZ -
  P3T93_RS04095 (P3T93_04095) - 838727..839167 (-) 441 WP_019468307.1 YwpF-like family protein -
  P3T93_RS04100 (P3T93_04100) ssb 839357..839776 (+) 420 WP_019468308.1 single-stranded DNA-binding protein Machinery gene
  P3T93_RS04105 (P3T93_04105) - 840221..840889 (+) 669 WP_046467856.1 transglycosylase family protein -
  P3T93_RS04110 (P3T93_04110) tenA 841352..842041 (+) 690 WP_019467991.1 thiaminase II -
  P3T93_RS04115 (P3T93_04115) thiD 842034..842855 (+) 822 WP_019467992.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  P3T93_RS04120 (P3T93_04120) thiM 842848..843627 (+) 780 WP_026034745.1 hydroxyethylthiazole kinase -
  P3T93_RS04125 (P3T93_04125) thiE 843630..844268 (+) 639 WP_019467994.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16019.41 Da        Isoelectric Point: 6.4650

>NTDB_id=801419 P3T93_RS04100 WP_019468308.1 839357..839776(+) (ssb) [Staphylococcus cohnii strain Dog166]
MINSIVIVGRLTKDPKIYEKEGNKLATFCVAVTRNYKDKNQKTICDYLFCKAFGKIANNVEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSEIFIETIKFMSPRSKNEDEALFDPLPIASNQELINNFHLEENDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=801419 P3T93_RS04100 WP_019468308.1 839357..839776(+) (ssb) [Staphylococcus cohnii strain Dog166]
ATGATTAACAGTATTGTCATTGTAGGGAGACTAACAAAGGACCCTAAAATTTATGAGAAGGAGGGAAATAAACTAGCTAC
ATTTTGCGTAGCTGTTACAAGAAACTATAAAGATAAAAATCAAAAAACTATTTGTGATTATTTATTCTGTAAGGCATTCG
GAAAAATTGCTAATAATGTCGAAAAATATATCAATCAAGGCTCATTAGTTGGTATAACTGGACAAATGCAATCGAGAAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAAATTTTTATTGAAACTATTAAATTTATGTCCCCACGGTCTAAAAA
TGAAGATGAAGCACTTTTTGATCCACTTCCAATAGCCTCAAATCAAGAACTTATTAATAATTTTCATTTAGAGGAAAACG
ATATTTATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2P185

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

63.359

94.245

0.597
  ssb Staphylococcus aureus MW2

62.595

94.245

0.59