Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   P3T93_RS00190 Genome accession   NZ_CP119997
Coordinates   44257..45885 (-) Length   542 a.a.
NCBI ID   WP_096638053.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain Dog166     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 44426..61476 44257..45885 flank -1459


Gene organization within MGE regions


Location: 44257..61476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T93_RS00190 (P3T93_00190) ccrB 44257..45885 (-) 1629 WP_096638053.1 cassette chromosome recombinase CcrB Machinery gene
  P3T93_RS00195 (P3T93_00195) ccrA 45906..47255 (-) 1350 WP_323701750.1 cassette chromosome recombinase CcrA Machinery gene
  P3T93_RS00200 (P3T93_00200) - 47433..47690 (-) 258 WP_058332293.1 hypothetical protein -
  P3T93_RS00205 (P3T93_00205) cch1 47753..49543 (-) 1791 WP_270912362.1 cassette chromosome replicative helicase -
  P3T93_RS00210 (P3T93_00210) - 49543..49812 (-) 270 WP_031838353.1 hypothetical protein -
  P3T93_RS00215 (P3T93_00215) - 49967..51526 (-) 1560 WP_323701751.1 hypothetical protein -
  P3T93_RS00220 (P3T93_00220) - 51706..51996 (+) 291 Protein_41 FRG domain-containing protein -
  P3T93_RS00225 (P3T93_00225) - 52349..53320 (+) 972 WP_323701752.1 hypothetical protein -
  P3T93_RS00230 (P3T93_00230) - 53566..54000 (+) 435 WP_323701753.1 GNAT family N-acetyltransferase -
  P3T93_RS00235 (P3T93_00235) - 54248..54754 (+) 507 WP_019469178.1 hypothetical protein -
  P3T93_RS00240 (P3T93_00240) - 54772..56247 (+) 1476 WP_323701754.1 DUF6038 family protein -
  P3T93_RS00245 (P3T93_00245) - 56476..57576 (+) 1101 WP_071562281.1 DNA polymerase -
  P3T93_RS00250 (P3T93_00250) - 57569..57937 (+) 369 WP_041784734.1 hypothetical protein -
  P3T93_RS00255 (P3T93_00255) - 57937..59577 (+) 1641 WP_064264393.1 DUF5906 domain-containing protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62380.08 Da        Isoelectric Point: 9.6533

>NTDB_id=801414 P3T93_RS00190 WP_096638053.1 44257..45885(-) (ccrB) [Staphylococcus cohnii strain Dog166]
MQQLKQKRVGIYVRVSTEMQSAEGYSIDGQINQIREYCDFNNFAVVDVYADRGISGKSMNRPALQRLLKDANEGHIDSVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNTILENIYTGQHQRALEGYYQGN
LPLGYNNIPDNKKDLMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHTPIISQSLWDKVQARKKQVSEKPQVHGKGTNILTGLISCPQCSASMSASTTVNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVIKQVVERVNQEHQIDTSALNHDIAYKQQQYD
EVQIKLDNLIKTLEDNPDLTSVLKNTIHQYEKQLNDITTQINQLKQQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNTNLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=801414 P3T93_RS00190 WP_096638053.1 44257..45885(-) (ccrB) [Staphylococcus cohnii strain Dog166]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTCCGCGTATCAACAGAAATGCAAAGTGCAGAGGGTTATAGTAT
CGACGGACAAATCAATCAAATCAGAGAATACTGTGATTTCAATAACTTCGCAGTTGTAGATGTATACGCGGATAGAGGTA
TCTCTGGAAAATCTATGAACCGACCAGCACTACAACGTTTGTTAAAAGATGCGAATGAAGGTCATATCGATTCTGTTATG
GTCTACAAAACAAACCGACTAGCACGTAATACATCAGACTTACTGAAAATTGTCGAAGATTTACATAAACAAAATGTCGA
ATTTTTCAGTTTGTCTGAACGAATGGAAGTCAATACGAGTAGCGGTAAGCTCATGTTACAAATTCTAGCAAGTTTTTCCG
AATTTGAAAGAAATACCATTTTAGAGAATATTTACACCGGACAACATCAAAGAGCCTTAGAAGGCTATTACCAAGGTAAT
CTTCCTTTAGGATATAATAACATACCAGATAATAAAAAAGATTTGATGATTAATCAGCATGAAGCTAATATTGTGAAATA
TATTTTTGAATCTTACGCCAAAGGTCATGGTTATCGTAAAATTGCCAACGCACTCAATCATAAAGGTTATGTCACTAAGA
AAGGTAATCCTTTTAGTATTTCAGCTGTTACTTATATTCTCTCAAACCCATTCTATATTGGTAAAATTCAATTCGCGAAA
TACAAAGATTGGAATGATAAACGTCGTAAAGGCTTGAATGATAAACCAGTAATCGCCGAAGGCAAACACACCCCTATTAT
TAGCCAATCATTATGGGATAAAGTCCAAGCACGTAAAAAACAAGTAAGTGAAAAACCACAAGTTCATGGTAAAGGAACCA
ATATTTTAACTGGATTAATTTCGTGTCCCCAATGTTCTGCTTCAATGTCTGCGAGCACAACAGTTAATACACTTAAAGAT
GGTACTAAAAAACGCATTCGCTACTATTCGTGTAGTAACTTTCGTAATAAAGGGTCAAAAGTATGTTCTGCGAATAGTGT
CAGAGCCGATGTAATTGAAAAATATGTTATGGATCAAATACTCGAAATTGTTAAAAGCGACAAGGTTATCAAGCAAGTCG
TTGAGCGTGTCAATCAAGAACATCAAATTGATACGTCTGCACTCAATCATGATATCGCATATAAGCAACAACAATATGAT
GAGGTCCAAATCAAATTAGATAACTTGATAAAAACGCTTGAAGATAATCCAGACTTAACATCTGTGCTTAAAAATACGAT
TCATCAGTATGAAAAACAACTCAATGACATCACAACTCAAATCAATCAACTTAAGCAACAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTTATTGACCGTATTGATATTCGTAAAGATGAGAATCATAAAAAGCAATTCTATGTCACTCTCAA
GCTCAATAATGAAATTATTAAACAACTTTTCAATAATACCAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(302-356)

Resolvase, N terminal domain (Resolvase)

(11-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

83.21

100

0.832