Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P3U68_RS08170 Genome accession   NZ_CP119996
Coordinates   1699767..1700654 (-) Length   295 a.a.
NCBI ID   WP_100006559.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain Dog167     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1694767..1705654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U68_RS08155 (P3U68_08155) xerC 1695271..1696182 (-) 912 WP_015729043.1 tyrosine recombinase XerC -
  P3U68_RS08160 (P3U68_08160) trmFO 1696282..1697586 (-) 1305 WP_015729042.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P3U68_RS08165 (P3U68_08165) topA 1697614..1699683 (-) 2070 WP_014614088.1 type I DNA topoisomerase -
  P3U68_RS08170 (P3U68_08170) dprA 1699767..1700654 (-) 888 WP_100006559.1 DNA-processing protein DprA Machinery gene
  P3U68_RS08175 (P3U68_08175) sucD 1700889..1701794 (-) 906 WP_014614090.1 succinate--CoA ligase subunit alpha -
  P3U68_RS08180 (P3U68_08180) sucC 1701816..1702982 (-) 1167 WP_015729040.1 ADP-forming succinate--CoA ligase subunit beta -
  P3U68_RS08185 (P3U68_08185) - 1703249..1703524 (-) 276 WP_015729039.1 hypothetical protein -
  P3U68_RS08190 (P3U68_08190) - 1703616..1704401 (-) 786 WP_100007381.1 ribonuclease HII -
  P3U68_RS08195 (P3U68_08195) ylqF 1704394..1705266 (-) 873 WP_015729037.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33601.05 Da        Isoelectric Point: 8.6269

>NTDB_id=801402 P3U68_RS08170 WP_100006559.1 1699767..1700654(-) (dprA) [Staphylococcus pseudintermedius strain Dog167]
MKQLLLLLLYAGFSTQQIQSYYPKLCTLTGNLPQRIQSFKSMLSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSTNSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTLSEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=801402 P3U68_RS08170 WP_100006559.1 1699767..1700654(-) (dprA) [Staphylococcus pseudintermedius strain Dog167]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATCCAATCCTATTACCCTAAACTTTGTAC
TTTAACAGGAAATCTACCTCAGCGCATTCAATCCTTCAAATCAATGCTTTCGCACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTACTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGGCTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTCTAAGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTTAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.69

98.305

0.498
  dprA Staphylococcus aureus N315

50.345

98.305

0.495