Detailed information NTG0801257

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: P3G59_RS24830
• Genome accession: NZ_CP119967
• Coordinates: 5555897..5557243 (+)
• Length: 448 a.a.
• NCBI ID: WP_277759343.1
• Uniprot ID: -
• Organism: Pseudomonas sp. A34-9
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5550897..5562243

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3G59_RS24805	pgeF	5551075..5551824 (-)	750	WP_277759341.1	peptidoglycan editing factor PgeF	-
P3G59_RS24810	rluD	5551821..5552783 (-)	963	WP_122592797.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
P3G59_RS24815	-	5552935..5553951 (+)	1017	WP_007909854.1	outer membrane protein assembly factor BamD	-
P3G59_RS24820	-	5554079..5554321 (+)	243	WP_093434843.1	PP0621 family protein	-
P3G59_RS24825	pilS	5554311..5555900 (+)	1590	WP_277759342.1	ATP-binding protein	Regulator
P3G59_RS24830	pilR	5555897..5557243 (+)	1347	WP_277759343.1	sigma-54 dependent transcriptional regulator	Regulator
P3G59_RS24835	thiO	5557375..5558475 (-)	1101	WP_277759344.1	glycine oxidase ThiO	-
P3G59_RS24840	-	5558532..5558933 (-)	402	WP_277759345.1	type IV pilin protein	-
P3G59_RS24845	-	5558949..5562032 (-)	3084	WP_277759346.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50104.42 Da
• Isoelectric Point: 6.5157

>NTDB_id=801257 P3G59_RS24830 WP_277759343.1 5555897..5557243(+) (pilR) [Pseudomonas sp. A34-9]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQTLLNRESFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGTALRMPAAGGSFTTIDRRLLGDSPPMRSLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAANGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQESVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIEVLA
ANMLKRLAKDTGQPPARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCAADGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=801257 P3G59_RS24830 WP_277759343.1 5555897..5557243(+) (pilR) [Pseudomonas sp. A34-9]
TTGAATACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCGCGCAATCTGGCTGAAGCCCAGACGCTGCTGAACCGCGAGAGCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGTACGGGACTGGAACTGGTGCAGCACATTCAGCAACGTTATCCACAACTGCCC
GTCGCGATGATCACCGCCTATGGCAGTCTGGAAACGGCCATCAACGCGTTGAAGGCCGGTGCTTTCGACTTTCTCACCAA
ACCGGTGGACCTCACCCGCCTGCGCGAACTGGTCGGCACGGCTTTGCGCATGCCGGCGGCAGGAGGCAGCTTTACAACGA
TTGACCGACGCTTGCTGGGCGATTCGCCGCCGATGCGCAGTCTGCGCAAGCAAATCGACAAACTCGCTCGCAGTCAGGCA
CCGGTGTACATCAGTGGCGAGTCGGGCAGTGGCAAGGAACTGGTCGCCCGCCTGATTCATGAGCAGGGGCCGCGCGCCAG
CCAGCCGTTCGTGCCGGTCAACTGCGGGGCAATCCCCTCGGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGTAAAGGCA
GTTTCACGGGCGCGGTCGAGGACAAGCCCGGGCTGTTTCAGGCAGCCAATGGCGGCACGTTGTTTCTTGATGAAGTGGCG
GACTTGCCGTTGTCGATGCAAGTCAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGTGTCGGCGGACAGCAGGA
AAGCGTGGTCGATGTGCGGATCCTTTGTGCTACGCACAAGGATCTCGATGCAGAGGTCGCGGCCGAACGCTTTCGTCAGG
ACCTTTATTACCGCTTGAACGTCATCGAACTGCGCGTGCCGCCCCTGCGCGAGCGCCGTGATGACATTGAAGTGCTTGCG
GCCAATATGCTGAAGCGTCTGGCCAAGGACACCGGCCAACCGCCAGCTCGCTTGCATCCGCAGGCTCTGGAAGCGCTGAA
GAACTACCGGTTTCCGGGCAATGTGCGGGAGTTGGAGAACGTGCTCGAACGGGCGCACACCTTGTGTGAAAACCGGACGA
TCGAGGCGCAGGATTTGCGTCTGAGTGAAGGCAACTGCGCGGCGGATGGCGGGATTGCCGATCTGACGCAGATCGACAAT
CTGGAAGATTATCTGGAGAACGTCGAGAGGAAGCTGATTCTGCAGGCGCTGGAGGAGACACGCTGGAATCGTACGGCGGC
GGCGCAGCGCTTGAGTCTTTCGTTCAGGTCGATGCGCTATCGGCTGAAGAAATTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	80.135	98.884	0.792
pilR	Acinetobacter baumannii strain A118	48.802	100	0.5