Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   P3F89_RS21030 Genome accession   NZ_CP119875
Coordinates   4049485..4051311 (-) Length   608 a.a.
NCBI ID   WP_002194685.1    Uniprot ID   -
Organism   Bacillus tropicus strain T36S-23     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 4044485..4056311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3F89_RS20995 (P3F89_20960) - 4044913..4045710 (-) 798 WP_000673185.1 NAD kinase -
  P3F89_RS21000 (P3F89_20965) - 4045729..4046367 (-) 639 WP_002194688.1 GTP pyrophosphokinase family protein -
  P3F89_RS21005 (P3F89_20970) - 4046398..4046769 (-) 372 WP_001180001.1 hypothetical protein -
  P3F89_RS21010 (P3F89_20975) - 4046914..4047492 (+) 579 WP_002194687.1 CYTH domain-containing protein -
  P3F89_RS21015 (P3F89_20980) - 4047671..4048069 (+) 399 WP_309573706.1 globin -
  P3F89_RS21020 (P3F89_20985) - 4048069..4048962 (+) 894 WP_000360642.1 ClpXP adapter SpxH family protein -
  P3F89_RS21025 (P3F89_20990) - 4049192..4049365 (+) 174 WP_000754593.1 hypothetical protein -
  P3F89_RS21030 (P3F89_20995) pepF 4049485..4051311 (-) 1827 WP_002194685.1 oligoendopeptidase F Regulator
  P3F89_RS21035 (P3F89_21000) - 4051362..4052606 (-) 1245 WP_033691187.1 competence protein CoiA -
  P3F89_RS21040 (P3F89_21005) - 4052687..4054231 (-) 1545 WP_000799204.1 cardiolipin synthase -
  P3F89_RS21045 (P3F89_21010) mecA 4054304..4054987 (-) 684 WP_000350710.1 adaptor protein MecA Regulator
  P3F89_RS21050 (P3F89_21015) - 4055328..4056002 (+) 675 WP_002194680.1 TerC family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70277.59 Da        Isoelectric Point: 4.6688

>NTDB_id=801221 P3F89_RS21030 WP_002194685.1 4049485..4051311(-) (pepF) [Bacillus tropicus strain T36S-23]
MSEQNTAKALPDRNEIEESSTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHMIHKKVQ
EGHAVTPDMLTEIYYNLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=801221 P3F89_RS21030 WP_002194685.1 4049485..4051311(-) (pepF) [Bacillus tropicus strain T36S-23]
ATGTCTGAACAAAATACAGCAAAAGCATTACCAGATCGTAACGAGATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCGTTAAATGACCGCGCGACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACACTGCAAACATTTTTGA
AAGAAAATAGAGACTTAAGTGTATATGAACATGCATTAGAAGAAATTACGCGCCAACGTCCGCACGTATTATCTGAAGCG
GAAGAGGCTTTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAGTAGAAATCACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGTGAAGATGCATTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCCAGTACG
TTAAGCGGAGCTGTGAAACGTAATAATTTCAACGCCCGTGTTCGTAAATACGATTCTGCACGTCAAGCGGCATTAAGTAA
TAATAATATTCCTGAAGCTGTGTATGATCAACTTGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCGCAAGACATGTTATTAAAGTCTTTACATGTACTTGGAGATGAGTATGTTGATATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATATGAGAATAAAGGGAAACGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCTTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAATTTGGTCATTCT
GTGCATAGTTACTACACAAGAAAAACGCAGCCGCACGTATACGGTGACTATTCAATCTTTGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCGTTGCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATGATTCATAAGAAAGTACAA
GAGGGACATGCGGTTACACCAGACATGTTAACGGAGATCTACTATAATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATTGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACGGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCGGATTACCCAATTGAAGTGCTAAAAAAAGCTGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCTTTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

97.533

0.488